Difference between revisions of "TSS:Hg 104392.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.055 |distance_to_tss=186 |entrez_id=2572 |gc_percent=0.60199 |gene_alias=GAD65 |gene_description=glutamate decarboxylase 2 |gene_name=GAD2 |gene_typ...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=BC047899:0 BC039038:0 ENST00000259271.7:137 uc001isq.3:137 M74826:137 ENST00000376261.7:-152 NM_001134366:-152 NM_000818:-152 uc001isp.3:-152 ENST00000428517.2:205 uc009xkr.5:205 BC029517:205 M81882:230 BC126327:257 BC126329:257 AB527954:282 HQ258311:282 X69936:297 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.055 | |cpg_percent=0.055 | ||
| + | |distance=0 | ||
|distance_to_tss=186 | |distance_to_tss=186 | ||
| + | |end=26216528 | ||
|entrez_id=2572 | |entrez_id=2572 | ||
|gc_percent=0.60199 | |gc_percent=0.60199 | ||
|gene_alias=GAD65 | |gene_alias=GAD65 | ||
|gene_description=glutamate decarboxylase 2 | |gene_description=glutamate decarboxylase 2 | ||
| − | |gene_name=GAD2 | + | |gene_id=2572 |
| + | |gene_name=glutamate decarboxylase 2 | ||
| + | |gene_source=HGNC:4093 | ||
| + | |gene_symbol=GAD2 | ||
| + | |gene_synonyms=GAD65 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:4093 | ||
|nearest_ensembl=ENSG00000136750 | |nearest_ensembl=ENSG00000136750 | ||
|nearest_promoter_id=NM_001134366 | |nearest_promoter_id=NM_001134366 | ||
|nearest_refseq=NM_000818 | |nearest_refseq=NM_000818 | ||
|nearest_unigene=Hs.231829 | |nearest_unigene=Hs.231829 | ||
| + | |num_trans=18 | ||
| + | |species=human | ||
| + | |start=26216458 | ||
| + | |strand=+ | ||
|tata_box="65(CTCTTTTAAAGC,-,0.00),66(TCTTTTAAAGCT,+,0.00)" | |tata_box="65(CTCTTTTAAAGC,-,0.00),66(TCTTTTAAAGCT,+,0.00)" | ||
| + | |transcript_name=BC047899 BC039038 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_104392.1 | |tss_id=hg_104392.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 20:50, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | BC047899 BC039038 |
|---|---|
| Distance: | 0 |
| Num_trans: | 18 |
| All_trans: | BC047899:0 BC039038:0 ENST00000259271.7:137 uc001isq.3:137 M74826:137 ENST00000376261.7:-152 NM_001134366:-152 NM_000818:-152 uc001isp.3:-152 ENST00000428517.2:205 uc009xkr.5:205 BC029517:205 M81882:230 BC126327:257 BC126329:257 AB527954:282 HQ258311:282 X69936:297 |
TATA-Box annotation
| Distance to TSS: | 186 |
|---|---|
| Nearest PromoterID: | NM_001134366 |
| Entrez ID: | 2572 |
| Nearest Unigene: | Hs.231829 |
| Nearest Refseq: | NM_000818 |
| Nearest Ensembl: | ENSG00000136750 |
| Gene Name: | glutamate decarboxylase 2 |
| Gene Alias: | GAD65 |
| Gene Description: | glutamate decarboxylase 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.055 |
| GC%: | 0.60199 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "65(CTCTTTTAAAGC,-,0.00),66(TCTTTTAAAGCT,+,0.00)" |
