Difference between revisions of "TSS:Hg 104742.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.16 |distance_to_tss=-1 |entrez_id=5979 |gc_percent=0.800995 |gene_alias=CDHF12|CDHR16|HSCR1|MEN2A|MEN2B|MTC1|PTC|RET-ELE1|RET51 |gene_description=re...") |
|||
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| + | |CDHR16= | ||
| + | |HSCR1= | ||
| + | |MEN2A= | ||
| + | |MEN2B= | ||
| + | |MTC1= | ||
| + | |PTC= | ||
| + | |RET-ELE1= | ||
| + | |RET51= | ||
| + | |all_trans=ENST00000615310.4:0 ENST00000498820.5:0 NM_020630:0 NM_020975:0 uc057svw.1:0 uc057svx.1:0 ENST00000340058.5:4 uc001jak.2:4 BC003072:4 BC004257:4 ENST00000355710.7:-34 uc001jal.4:-34 X15262:35 AK291807:124 Y12528:184 CU678360:184 CU678648:184 AB384817:184 KJ901702:184 KJ897462:184 KR709953:184 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.16 | |cpg_percent=0.16 | ||
| + | |distance=0 | ||
|distance_to_tss=-1 | |distance_to_tss=-1 | ||
| + | |end=43077075 | ||
|entrez_id=5979 | |entrez_id=5979 | ||
|gc_percent=0.800995 | |gc_percent=0.800995 | ||
|gene_alias=CDHF12|CDHR16|HSCR1|MEN2A|MEN2B|MTC1|PTC|RET-ELE1|RET51 | |gene_alias=CDHF12|CDHR16|HSCR1|MEN2A|MEN2B|MTC1|PTC|RET-ELE1|RET51 | ||
|gene_description=ret proto-oncogene | |gene_description=ret proto-oncogene | ||
| − | |gene_name=RET | + | |gene_id=5979 |
| + | |gene_name=ret proto-oncogene | ||
| + | |gene_source=HGNC:9967 | ||
| + | |gene_symbol=RET | ||
| + | |gene_synonyms=CDHF12 CDHR16 PTC RET51 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:9967 | ||
|nearest_ensembl=ENSG00000165731 | |nearest_ensembl=ENSG00000165731 | ||
|nearest_promoter_id=NM_020630 | |nearest_promoter_id=NM_020630 | ||
|nearest_refseq=NM_000323 | |nearest_refseq=NM_000323 | ||
|nearest_unigene=Hs.350321 | |nearest_unigene=Hs.350321 | ||
| + | |num_trans=21 | ||
| + | |species=human | ||
| + | |start=43077060 | ||
| + | |strand=+ | ||
| + | |transcript_name=ENST00000615310.4 ENST00000498820.5 NM_020630 NM_020975 uc057svw.1 uc057svx.1 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_104742.1 | |tss_id=hg_104742.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=C9JYL6 Q9BTX6 | ||
}} | }} | ||
Revision as of 21:05, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000615310.4 ENST00000498820.5 NM_020630 NM_020975 uc057svw.1 uc057svx.1 |
|---|---|
| Distance: | 0 |
| Num_trans: | 21 |
| All_trans: | ENST00000615310.4:0 ENST00000498820.5:0 NM_020630:0 NM_020975:0 uc057svw.1:0 uc057svx.1:0 ENST00000340058.5:4 uc001jak.2:4 BC003072:4 BC004257:4 ENST00000355710.7:-34 uc001jal.4:-34 X15262:35 AK291807:124 Y12528:184 CU678360:184 CU678648:184 AB384817:184 KJ901702:184 KJ897462:184 KR709953:184 |
TATA-Box annotation
| Distance to TSS: | -1 |
|---|---|
| Nearest PromoterID: | NM_020630 |
| Entrez ID: | 5979 |
| Nearest Unigene: | Hs.350321 |
| Nearest Refseq: | NM_000323 |
| Nearest Ensembl: | ENSG00000165731 |
| Gene Name: | ret proto-oncogene |
| Gene Alias: | CDHF12 |
| Gene Description: | ret proto-oncogene |
| Gene Type: | protein-coding |
| CpG%: | 0.16 |
| GC%: | 0.800995 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
