Difference between revisions of "TSS:Hg 104752.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.005 |distance_to_tss=-7092 |entrez_id=55454 |gc_percent=0.263682 |gene_alias=CHGN2|ChGn-2|GALNACT-2|GALNACT2|PRO0082|beta4GalNAcT |gene_description=...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |ChGn-2= | ||
| + | |GALNACT-2= | ||
| + | |GALNACT2= | ||
| + | |PRO0082= | ||
| + | |beta4GalNAcT= | ||
| + | |chr=chr10 | ||
|cpg_percent=0.005 | |cpg_percent=0.005 | ||
| + | |distance= | ||
|distance_to_tss=-7092 | |distance_to_tss=-7092 | ||
| + | |end=43147810 | ||
|entrez_id=55454 | |entrez_id=55454 | ||
|gc_percent=0.263682 | |gc_percent=0.263682 | ||
| Line 12: | Line 20: | ||
|nearest_refseq=NM_018590 | |nearest_refseq=NM_018590 | ||
|nearest_unigene=Hs.657569 | |nearest_unigene=Hs.657569 | ||
| + | |num_trans=0 | ||
| + | |species=human | ||
| + | |start=43147800 | ||
| + | |strand=+ | ||
|tata_box="-92(ATTTATATAGGC,+,0.00),-4(TGCTTTTTAAAG,-,0.00),-2(CTTTTTAAAGTA,+,0.00)" | |tata_box="-92(ATTTATATAGGC,+,0.00),-4(TGCTTTTTAAAG,-,0.00),-2(CTTTTTAAAGTA,+,0.00)" | ||
| + | |transcript_name= | ||
| + | |tss_classification=no | ||
|tss_id=hg_104752.1 | |tss_id=hg_104752.1 | ||
| + | |tss_score=1 | ||
}} | }} | ||
Revision as of 21:06, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | |
|---|---|
| Distance: | |
| Num_trans: | 0 |
| All_trans: |
TATA-Box annotation
| Distance to TSS: | -7092 |
|---|---|
| Nearest PromoterID: | NM_001319654 |
| Entrez ID: | 55454 |
| Nearest Unigene: | Hs.657569 |
| Nearest Refseq: | NM_018590 |
| Nearest Ensembl: | ENSG00000169826 |
| Gene Name: | CSGALNACT2 |
| Gene Alias: | CHGN2 |
| Gene Description: | chondroitin sulfate N-acetylgalactosaminyltransferase 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.005 |
| GC%: | 0.263682 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-92(ATTTATATAGGC,+,0.00),-4(TGCTTTTTAAAG,-,0.00),-2(CTTTTTAAAGTA,+,0.00)" |
