Difference between revisions of "TSS:Hg 104806.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.02 |distance_to_tss=-6 |entrez_id=100132929 |gc_percent=0.626866 |gene_alias=FAM25A|FAM25B|FAM25C|FAM25G |gene_description=protein FAM25 |gene_name=...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |FAM25B= | ||
| + | |FAM25C= | ||
| + | |FAM25G= | ||
| + | |all_trans=NR_104039:5 uc031weu.2:5 uc057taa.1:5 ENST00000623997.3:31 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.02 | |cpg_percent=0.02 | ||
| + | |distance=5 | ||
|distance_to_tss=-6 | |distance_to_tss=-6 | ||
| + | |end=46369082 | ||
|entrez_id=100132929 | |entrez_id=100132929 | ||
|gc_percent=0.626866 | |gc_percent=0.626866 | ||
|gene_alias=FAM25A|FAM25B|FAM25C|FAM25G | |gene_alias=FAM25A|FAM25B|FAM25C|FAM25G | ||
|gene_description=protein FAM25 | |gene_description=protein FAM25 | ||
| − | |gene_name=FAM25BP | + | |gene_id=100132929 |
| + | |gene_name="family with sequence similarity 25 member B, pseudogene" | ||
| + | |gene_source=HGNC:23584 | ||
| + | |gene_symbol=FAM25BP | ||
| + | |gene_synonyms=bA144G6.8 | ||
|gene_type=pseudo | |gene_type=pseudo | ||
| + | |hgnc_mgi_id=HGNC:23584 | ||
|nearest_ensembl= | |nearest_ensembl= | ||
|nearest_promoter_id=NR_104039 | |nearest_promoter_id=NR_104039 | ||
|nearest_refseq=NM_001137556 | |nearest_refseq=NM_001137556 | ||
|nearest_unigene=Hs.645212 | |nearest_unigene=Hs.645212 | ||
| + | |num_trans=4 | ||
| + | |species=human | ||
| + | |start=46369080 | ||
| + | |strand=+ | ||
|tata_box="-31(AGCTATAAAAGC,-,0.00)" | |tata_box="-31(AGCTATAAAAGC,-,0.00)" | ||
| + | |transcript_name=NR_104039 uc031weu.2 uc057taa.1 | ||
| + | |tss_classification=no | ||
|tss_id=hg_104806.1 | |tss_id=hg_104806.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 21:08, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | NR_104039 uc031weu.2 uc057taa.1 |
|---|---|
| Distance: | 5 |
| Num_trans: | 4 |
| All_trans: | NR_104039:5 uc031weu.2:5 uc057taa.1:5 ENST00000623997.3:31 |
TATA-Box annotation
| Distance to TSS: | -6 |
|---|---|
| Nearest PromoterID: | NR_104039 |
| Entrez ID: | 100132929 |
| Nearest Unigene: | Hs.645212 |
| Nearest Refseq: | NM_001137556 |
| Nearest Ensembl: | |
| Gene Name: | "family with sequence similarity 25 member B, pseudogene" |
| Gene Alias: | FAM25A |
| Gene Description: | protein FAM25 |
| Gene Type: | pseudo |
| CpG%: | 0.02 |
| GC%: | 0.626866 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-31(AGCTATAAAAGC,-,0.00)" |
