Difference between revisions of "TSS:Hg 105000.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.1 |distance_to_tss=22 |entrez_id=7019 |gc_percent=0.711443 |gene_alias=MTDPS15|MTTF1|MTTFA|TCF6|TCF6L1|TCF6L2|TCF6L3 |gene_description="transcriptio...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |MTTF1= | ||
| + | |MTTFA= | ||
| + | |TCF6= | ||
| + | |TCF6L1= | ||
| + | |TCF6L2= | ||
| + | |TCF6L3= | ||
| + | |all_trans=NM_003201:-9 NM_001270782:-9 NR_073073:-9 ENST00000487519.5:-130 uc001jkf.5:-130 ENST00000373899.3:166 uc001jkg.5:166 BC029815:166 AK312558:226 M62810:237 ENST00000373895.7:255 uc031pve.2:255 BC018628:255 BC104482:259 BC126366:281 EU279428:341 HQ258758:363 KJ897655:363 AB451366:369 AB464302:369 CR407653:369 BT019658:369 BT019659:369 AB451241:369 ENST00000395377.2:425 uc057tjs.1:425 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.1 | |cpg_percent=0.1 | ||
| + | |distance=-9 | ||
|distance_to_tss=22 | |distance_to_tss=22 | ||
| + | |end=58385179 | ||
|entrez_id=7019 | |entrez_id=7019 | ||
|gc_percent=0.711443 | |gc_percent=0.711443 | ||
|gene_alias=MTDPS15|MTTF1|MTTFA|TCF6|TCF6L1|TCF6L2|TCF6L3 | |gene_alias=MTDPS15|MTTF1|MTTFA|TCF6|TCF6L1|TCF6L2|TCF6L3 | ||
|gene_description="transcription factor A, mitochondrial" | |gene_description="transcription factor A, mitochondrial" | ||
| − | |gene_name=TFAM | + | |gene_id=7019 |
| + | |gene_name="transcription factor A, mitochondrial" | ||
| + | |gene_source=HGNC:11741 | ||
| + | |gene_symbol=TFAM | ||
| + | |gene_synonyms= | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:11741 | ||
|nearest_ensembl=ENSG00000108064 | |nearest_ensembl=ENSG00000108064 | ||
|nearest_promoter_id=NM_001270782 | |nearest_promoter_id=NM_001270782 | ||
|nearest_refseq=NM_003201 | |nearest_refseq=NM_003201 | ||
|nearest_unigene=Hs.594250 | |nearest_unigene=Hs.594250 | ||
| + | |num_trans=26 | ||
| + | |species=human | ||
| + | |start=58385151 | ||
| + | |strand=+ | ||
| + | |transcript_name=NM_003201 NM_001270782 NR_073073 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_105000.1 | |tss_id=hg_105000.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=Q00059 | ||
}} | }} | ||
Revision as of 21:17, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | NM_003201 NM_001270782 NR_073073 |
|---|---|
| Distance: | -9 |
| Num_trans: | 26 |
| All_trans: | NM_003201:-9 NM_001270782:-9 NR_073073:-9 ENST00000487519.5:-130 uc001jkf.5:-130 ENST00000373899.3:166 uc001jkg.5:166 BC029815:166 AK312558:226 M62810:237 ENST00000373895.7:255 uc031pve.2:255 BC018628:255 BC104482:259 BC126366:281 EU279428:341 HQ258758:363 KJ897655:363 AB451366:369 AB464302:369 CR407653:369 BT019658:369 BT019659:369 AB451241:369 ENST00000395377.2:425 uc057tjs.1:425 |
TATA-Box annotation
| Distance to TSS: | 22 |
|---|---|
| Nearest PromoterID: | NM_001270782 |
| Entrez ID: | 7019 |
| Nearest Unigene: | Hs.594250 |
| Nearest Refseq: | NM_003201 |
| Nearest Ensembl: | ENSG00000108064 |
| Gene Name: | "transcription factor A, mitochondrial" |
| Gene Alias: | MTDPS15 |
| Gene Description: | "transcription factor A, mitochondrial" |
| Gene Type: | protein-coding |
| CpG%: | 0.1 |
| GC%: | 0.711443 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
