Difference between revisions of "TSS:Hg 105025.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.005 |distance_to_tss=59079 |entrez_id=84457 |gc_percent=0.40796 |gene_alias=- |gene_description=phytanoyl-CoA 2-hydroxylase interacting protein like...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=ENST00000472199.1:-8 uc057tjy.1:-8 AB058699:16 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.005 | |cpg_percent=0.005 | ||
| + | |distance=-8 | ||
|distance_to_tss=59079 | |distance_to_tss=59079 | ||
| + | |end=59236557 | ||
|entrez_id=84457 | |entrez_id=84457 | ||
|gc_percent=0.40796 | |gc_percent=0.40796 | ||
|gene_alias=- | |gene_alias=- | ||
|gene_description=phytanoyl-CoA 2-hydroxylase interacting protein like | |gene_description=phytanoyl-CoA 2-hydroxylase interacting protein like | ||
| − | |gene_name=PHYHIPL | + | |gene_id=84457 |
| + | |gene_name=phytanoyl-CoA 2-hydroxylase interacting protein like | ||
| + | |gene_source=HGNC:29378 | ||
| + | |gene_symbol=PHYHIPL | ||
| + | |gene_synonyms=Em:AC025038.1 KIAA1796 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:29378 | ||
|nearest_ensembl=ENSG00000165443 | |nearest_ensembl=ENSG00000165443 | ||
|nearest_promoter_id=NM_001143774 | |nearest_promoter_id=NM_001143774 | ||
|nearest_refseq=NM_032439 | |nearest_refseq=NM_032439 | ||
|nearest_unigene=Hs.499704 | |nearest_unigene=Hs.499704 | ||
| + | |num_trans=3 | ||
| + | |species=human | ||
| + | |start=59236534 | ||
| + | |strand=+ | ||
|tata_box="-3(TGGTTTTTAAGC,-,0.00),-1(GTTTTTAAGCCC,+,0.00)" | |tata_box="-3(TGGTTTTTAAGC,-,0.00),-1(GTTTTTAAGCCC,+,0.00)" | ||
| + | |transcript_name=ENST00000472199.1 uc057tjy.1 | ||
| + | |tss_classification=no | ||
|tss_id=hg_105025.1 | |tss_id=hg_105025.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 21:18, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000472199.1 uc057tjy.1 |
|---|---|
| Distance: | -8 |
| Num_trans: | 3 |
| All_trans: | ENST00000472199.1:-8 uc057tjy.1:-8 AB058699:16 |
TATA-Box annotation
| Distance to TSS: | 59079 |
|---|---|
| Nearest PromoterID: | NM_001143774 |
| Entrez ID: | 84457 |
| Nearest Unigene: | Hs.499704 |
| Nearest Refseq: | NM_032439 |
| Nearest Ensembl: | ENSG00000165443 |
| Gene Name: | phytanoyl-CoA 2-hydroxylase interacting protein like |
| Gene Alias: | - |
| Gene Description: | phytanoyl-CoA 2-hydroxylase interacting protein like |
| Gene Type: | protein-coding |
| CpG%: | 0.005 |
| GC%: | 0.40796 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-3(TGGTTTTTAAGC,-,0.00),-1(GTTTTTAAGCCC,+,0.00)" |
