Difference between revisions of "TSS:Hg 105114.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.01 |distance_to_tss=9695 |entrez_id=219790 |gc_percent=0.472637 |gene_alias=PLEKHK1|bA531F24.1 |gene_description=rhotekin 2 |gene_name=RTKN2 |gene_t...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=BX647853:-3 BX647904:-3 | ||
| + | |bA531F24.1= | ||
| + | |chr=chr10 | ||
|cpg_percent=0.01 | |cpg_percent=0.01 | ||
| + | |distance=-3 | ||
|distance_to_tss=9695 | |distance_to_tss=9695 | ||
| + | |end=62259177 | ||
|entrez_id=219790 | |entrez_id=219790 | ||
|gc_percent=0.472637 | |gc_percent=0.472637 | ||
|gene_alias=PLEKHK1|bA531F24.1 | |gene_alias=PLEKHK1|bA531F24.1 | ||
|gene_description=rhotekin 2 | |gene_description=rhotekin 2 | ||
| − | |gene_name= | + | |gene_id=22891 |
| + | |gene_name=zinc finger protein 365 | ||
| + | |gene_source=HGNC:18194 | ||
| + | |gene_symbol=ZNF365 | ||
| + | |gene_synonyms=KIAA0844 UAN | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:18194 | ||
|nearest_ensembl=ENSG00000182010 | |nearest_ensembl=ENSG00000182010 | ||
|nearest_promoter_id=NM_145307 | |nearest_promoter_id=NM_145307 | ||
|nearest_refseq=NM_145307 | |nearest_refseq=NM_145307 | ||
|nearest_unigene=Hs.58559 | |nearest_unigene=Hs.58559 | ||
| + | |num_trans=2 | ||
| + | |species=human | ||
| + | |start=62259159 | ||
| + | |strand=+ | ||
|tata_box="-35(GGTTTTATAAAG,-,0.00),-33(TTTTATAAAGGG,+,0.00)" | |tata_box="-35(GGTTTTATAAAG,-,0.00),-33(TTTTATAAAGGG,+,0.00)" | ||
| + | |transcript_name=BX647853 BX647904 | ||
| + | |tss_classification=no | ||
|tss_id=hg_105114.1 | |tss_id=hg_105114.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 21:21, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | BX647853 BX647904 |
|---|---|
| Distance: | -3 |
| Num_trans: | 2 |
| All_trans: | BX647853:-3 BX647904:-3 |
TATA-Box annotation
| Distance to TSS: | 9695 |
|---|---|
| Nearest PromoterID: | NM_145307 |
| Entrez ID: | 219790 |
| Nearest Unigene: | Hs.58559 |
| Nearest Refseq: | NM_145307 |
| Nearest Ensembl: | ENSG00000182010 |
| Gene Name: | zinc finger protein 365 |
| Gene Alias: | PLEKHK1 |
| Gene Description: | rhotekin 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.01 |
| GC%: | 0.472637 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-35(GGTTTTATAAAG,-,0.00),-33(TTTTATAAAGGG,+,0.00)" |
