Difference between revisions of "TSS:Hg 105165.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.12 |distance_to_tss=-140 |entrez_id=1959 |gc_percent=0.716418 |gene_alias=AT591|CMT1D|CMT4E|KROX20 |gene_description=early growth response 2 |gene_n...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |CMT1D= | ||
| + | |CMT4E= | ||
| + | |KROX20= | ||
| + | |chr=chr10 | ||
|cpg_percent=0.12 | |cpg_percent=0.12 | ||
| + | |distance= | ||
|distance_to_tss=-140 | |distance_to_tss=-140 | ||
| + | |end=62816535 | ||
|entrez_id=1959 | |entrez_id=1959 | ||
|gc_percent=0.716418 | |gc_percent=0.716418 | ||
| Line 12: | Line 18: | ||
|nearest_refseq=NM_000399 | |nearest_refseq=NM_000399 | ||
|nearest_unigene=Hs.1395 | |nearest_unigene=Hs.1395 | ||
| + | |num_trans=0 | ||
| + | |species=human | ||
| + | |start=62816505 | ||
| + | |strand=+ | ||
|tata_box="-94(GCCCATATATGG,-,0.00),-92(CCATATATGGAC,+,0.00)" | |tata_box="-94(GCCCATATATGG,-,0.00),-92(CCATATATGGAC,+,0.00)" | ||
| + | |transcript_name= | ||
| + | |tss_classification=yes | ||
|tss_id=hg_105165.1 | |tss_id=hg_105165.1 | ||
| + | |tss_score=1 | ||
}} | }} | ||
Revision as of 21:24, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | |
|---|---|
| Distance: | |
| Num_trans: | 0 |
| All_trans: |
TATA-Box annotation
| Distance to TSS: | -140 |
|---|---|
| Nearest PromoterID: | NM_001321037 |
| Entrez ID: | 1959 |
| Nearest Unigene: | Hs.1395 |
| Nearest Refseq: | NM_000399 |
| Nearest Ensembl: | ENSG00000122877 |
| Gene Name: | EGR2 |
| Gene Alias: | AT591 |
| Gene Description: | early growth response 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.12 |
| GC%: | 0.716418 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-94(GCCCATATATGG,-,0.00),-92(CCATATATGGAC,+,0.00)" |
