Difference between revisions of "TSS:Hg 105169.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.1 |distance_to_tss=8 |entrez_id=29982 |gc_percent=0.691542 |gene_alias=COPR|COPR1|COPR2|NRBF-2 |gene_description=nuclear receptor binding factor 2 |...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |COPR1= | ||
| + | |COPR2= | ||
| + | |NRBF-2= | ||
| + | |all_trans=ENST00000435510.6:-3 NM_030759:-3 NM_001282405:-3 uc010qip.3:-3 ENST00000277746.10:30 uc001jmj.6:30 AK054957:30 AL136656:33 ENST00000611479.1:45 uc057tnp.1:45 AF267866:47 AK301656:65 AK225257:76 AK225256:80 AY267839:99 AY267840:99 BC011707:113 AB590768:211 EU832288:211 EU832373:211 HQ447342:211 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.1 | |cpg_percent=0.1 | ||
| + | |distance=-3 | ||
|distance_to_tss=8 | |distance_to_tss=8 | ||
| + | |end=63133260 | ||
|entrez_id=29982 | |entrez_id=29982 | ||
|gc_percent=0.691542 | |gc_percent=0.691542 | ||
|gene_alias=COPR|COPR1|COPR2|NRBF-2 | |gene_alias=COPR|COPR1|COPR2|NRBF-2 | ||
|gene_description=nuclear receptor binding factor 2 | |gene_description=nuclear receptor binding factor 2 | ||
| − | |gene_name=NRBF2 | + | |gene_id=29982 |
| + | |gene_name=nuclear receptor binding factor 2 | ||
| + | |gene_source=HGNC:19692 | ||
| + | |gene_symbol=NRBF2 | ||
| + | |gene_synonyms=COPR1 COPR2 DKFZp564C1664 FLJ30395 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:19692 | ||
|nearest_ensembl=ENSG00000148572 | |nearest_ensembl=ENSG00000148572 | ||
|nearest_promoter_id=NM_030759 | |nearest_promoter_id=NM_030759 | ||
|nearest_refseq=NM_030759 | |nearest_refseq=NM_030759 | ||
|nearest_unigene=Hs.449628 | |nearest_unigene=Hs.449628 | ||
| + | |num_trans=21 | ||
| + | |species=human | ||
| + | |start=63133249 | ||
| + | |strand=+ | ||
| + | |transcript_name=ENST00000435510.6 NM_030759 NM_001282405 uc010qip.3 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_105169.1 | |tss_id=hg_105169.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=Q96F24 | ||
}} | }} | ||
Revision as of 21:24, 8 March 2018
Basic information about the TSS
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|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000435510.6 NM_030759 NM_001282405 uc010qip.3 |
|---|---|
| Distance: | -3 |
| Num_trans: | 21 |
| All_trans: | ENST00000435510.6:-3 NM_030759:-3 NM_001282405:-3 uc010qip.3:-3 ENST00000277746.10:30 uc001jmj.6:30 AK054957:30 AL136656:33 ENST00000611479.1:45 uc057tnp.1:45 AF267866:47 AK301656:65 AK225257:76 AK225256:80 AY267839:99 AY267840:99 BC011707:113 AB590768:211 EU832288:211 EU832373:211 HQ447342:211 |
TATA-Box annotation
| Distance to TSS: | 8 |
|---|---|
| Nearest PromoterID: | NM_030759 |
| Entrez ID: | 29982 |
| Nearest Unigene: | Hs.449628 |
| Nearest Refseq: | NM_030759 |
| Nearest Ensembl: | ENSG00000148572 |
| Gene Name: | nuclear receptor binding factor 2 |
| Gene Alias: | COPR |
| Gene Description: | nuclear receptor binding factor 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.1 |
| GC%: | 0.691542 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
