Difference between revisions of "TSS:Hg 105171.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.1 |distance_to_tss=130 |entrez_id=29982 |gc_percent=0.701493 |gene_alias=COPR|COPR1|COPR2|NRBF-2 |gene_description=nuclear receptor binding factor 2...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |COPR1= | ||
| + | |COPR2= | ||
| + | |NRBF-2= | ||
| + | |all_trans=BC011707:0 AY267839:-12 AY267840:-12 AK225256:-31 AK225257:-35 AK301656:-46 AF267866:-64 ENST00000611479.1:-66 uc057tnp.1:-66 AL136656:-78 ENST00000277746.10:-81 uc001jmj.6:-81 AK054957:-81 AB590768:87 EU832288:87 EU832373:87 HQ447342:87 ENST00000435510.6:-124 NM_030759:-124 NM_001282405:-124 uc010qip.3:-124 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.1 | |cpg_percent=0.1 | ||
| + | |distance=0 | ||
|distance_to_tss=130 | |distance_to_tss=130 | ||
| + | |end=63133384 | ||
|entrez_id=29982 | |entrez_id=29982 | ||
|gc_percent=0.701493 | |gc_percent=0.701493 | ||
|gene_alias=COPR|COPR1|COPR2|NRBF-2 | |gene_alias=COPR|COPR1|COPR2|NRBF-2 | ||
|gene_description=nuclear receptor binding factor 2 | |gene_description=nuclear receptor binding factor 2 | ||
| − | |gene_name=NRBF2 | + | |gene_id=29982 |
| + | |gene_name=nuclear receptor binding factor 2 | ||
| + | |gene_source=HGNC:19692 | ||
| + | |gene_symbol=NRBF2 | ||
| + | |gene_synonyms=COPR1 COPR2 DKFZp564C1664 FLJ30395 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:19692 | ||
|nearest_ensembl=ENSG00000148572 | |nearest_ensembl=ENSG00000148572 | ||
|nearest_promoter_id=NM_030759 | |nearest_promoter_id=NM_030759 | ||
|nearest_refseq=NM_030759 | |nearest_refseq=NM_030759 | ||
|nearest_unigene=Hs.449628 | |nearest_unigene=Hs.449628 | ||
| + | |num_trans=21 | ||
| + | |species=human | ||
| + | |start=63133370 | ||
| + | |strand=+ | ||
| + | |transcript_name=BC011707 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_105171.1 | |tss_id=hg_105171.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 21:24, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | BC011707 |
|---|---|
| Distance: | 0 |
| Num_trans: | 21 |
| All_trans: | BC011707:0 AY267839:-12 AY267840:-12 AK225256:-31 AK225257:-35 AK301656:-46 AF267866:-64 ENST00000611479.1:-66 uc057tnp.1:-66 AL136656:-78 ENST00000277746.10:-81 uc001jmj.6:-81 AK054957:-81 AB590768:87 EU832288:87 EU832373:87 HQ447342:87 ENST00000435510.6:-124 NM_030759:-124 NM_001282405:-124 uc010qip.3:-124 |
TATA-Box annotation
| Distance to TSS: | 130 |
|---|---|
| Nearest PromoterID: | NM_030759 |
| Entrez ID: | 29982 |
| Nearest Unigene: | Hs.449628 |
| Nearest Refseq: | NM_030759 |
| Nearest Ensembl: | ENSG00000148572 |
| Gene Name: | nuclear receptor binding factor 2 |
| Gene Alias: | COPR |
| Gene Description: | nuclear receptor binding factor 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.1 |
| GC%: | 0.701493 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
