Difference between revisions of "TSS:Hg 105177.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.04 |distance_to_tss=-316 |entrez_id=221035 |gc_percent=0.572139 |gene_alias=C10orf74|Yip2b |gene_description=receptor accessory protein 3 |gene_name...") |
|||
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| + | |Yip2b= | ||
| + | |all_trans=ENST00000373758.4:306 NM_001001330:306 uc057tnv.1:306 uc001jmt.3:306 BC068557:306 BC057832:351 BC010040:356 BC038724:394 AK289976:405 AY562241:489 CU686667:489 HQ447522:489 KJ534927:489 KJ535017:489 KJ535031:489 KJ895854:489 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.04 | |cpg_percent=0.04 | ||
| + | |distance=306 | ||
|distance_to_tss=-316 | |distance_to_tss=-316 | ||
| + | |end=63521057 | ||
|entrez_id=221035 | |entrez_id=221035 | ||
|gc_percent=0.572139 | |gc_percent=0.572139 | ||
|gene_alias=C10orf74|Yip2b | |gene_alias=C10orf74|Yip2b | ||
|gene_description=receptor accessory protein 3 | |gene_description=receptor accessory protein 3 | ||
| − | |gene_name=REEP3 | + | |gene_id=221035 |
| + | |gene_name=receptor accessory protein 3 | ||
| + | |gene_source=HGNC:23711 | ||
| + | |gene_symbol=REEP3 | ||
| + | |gene_synonyms=Yip2b | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:23711 | ||
|nearest_ensembl=ENSG00000165476 | |nearest_ensembl=ENSG00000165476 | ||
|nearest_promoter_id=NM_001001330 | |nearest_promoter_id=NM_001001330 | ||
|nearest_refseq=NM_001001330 | |nearest_refseq=NM_001001330 | ||
|nearest_unigene=Hs.499833 | |nearest_unigene=Hs.499833 | ||
| + | |num_trans=16 | ||
| + | |species=human | ||
| + | |start=63521036 | ||
| + | |strand=+ | ||
| + | |transcript_name=ENST00000373758.4 NM_001001330 uc057tnv.1 uc001jmt.3 BC068557 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_105177.1 | |tss_id=hg_105177.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=X5DR89 X6R3X1 | ||
}} | }} | ||
Revision as of 21:24, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000373758.4 NM_001001330 uc057tnv.1 uc001jmt.3 BC068557 |
|---|---|
| Distance: | 306 |
| Num_trans: | 16 |
| All_trans: | ENST00000373758.4:306 NM_001001330:306 uc057tnv.1:306 uc001jmt.3:306 BC068557:306 BC057832:351 BC010040:356 BC038724:394 AK289976:405 AY562241:489 CU686667:489 HQ447522:489 KJ534927:489 KJ535017:489 KJ535031:489 KJ895854:489 |
TATA-Box annotation
| Distance to TSS: | -316 |
|---|---|
| Nearest PromoterID: | NM_001001330 |
| Entrez ID: | 221035 |
| Nearest Unigene: | Hs.499833 |
| Nearest Refseq: | NM_001001330 |
| Nearest Ensembl: | ENSG00000165476 |
| Gene Name: | receptor accessory protein 3 |
| Gene Alias: | C10orf74 |
| Gene Description: | receptor accessory protein 3 |
| Gene Type: | protein-coding |
| CpG%: | 0.04 |
| GC%: | 0.572139 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
