Difference between revisions of "TSS:Hg 105208.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.005 |distance_to_tss=1846 |entrez_id=347731 |gc_percent=0.402985 |gene_alias=- |gene_description=leucine rich repeat transmembrane neuronal 3 |gene_...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=AK294029:261 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.005 | |cpg_percent=0.005 | ||
| + | |distance=261 | ||
|distance_to_tss=1846 | |distance_to_tss=1846 | ||
| + | |end=66927886 | ||
|entrez_id=347731 | |entrez_id=347731 | ||
|gc_percent=0.402985 | |gc_percent=0.402985 | ||
|gene_alias=- | |gene_alias=- | ||
|gene_description=leucine rich repeat transmembrane neuronal 3 | |gene_description=leucine rich repeat transmembrane neuronal 3 | ||
| − | |gene_name=LRRTM3 | + | |gene_id=347731 |
| + | |gene_name=leucine rich repeat transmembrane neuronal 3 | ||
| + | |gene_source=HGNC:19410 | ||
| + | |gene_symbol=LRRTM3 | ||
| + | |gene_synonyms= | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:19410 | ||
|nearest_ensembl=ENSG00000198739 | |nearest_ensembl=ENSG00000198739 | ||
|nearest_promoter_id=NM_178011 | |nearest_promoter_id=NM_178011 | ||
|nearest_refseq=NM_178011 | |nearest_refseq=NM_178011 | ||
|nearest_unigene=Hs.652155 | |nearest_unigene=Hs.652155 | ||
| + | |num_trans=1 | ||
| + | |species=human | ||
| + | |start=66927874 | ||
| + | |strand=+ | ||
|tata_box="20(AAGTTTTAAAGG,-,0.00),22(GTTTTAAAGGTC,+,0.00)" | |tata_box="20(AAGTTTTAAAGG,-,0.00),22(GTTTTAAAGGTC,+,0.00)" | ||
| + | |transcript_name=AK294029 | ||
| + | |tss_classification=no | ||
|tss_id=hg_105208.1 | |tss_id=hg_105208.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=B4DFC3 | ||
}} | }} | ||
Revision as of 21:25, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | AK294029 |
|---|---|
| Distance: | 261 |
| Num_trans: | 1 |
| All_trans: | AK294029:261 |
TATA-Box annotation
| Distance to TSS: | 1846 |
|---|---|
| Nearest PromoterID: | NM_178011 |
| Entrez ID: | 347731 |
| Nearest Unigene: | Hs.652155 |
| Nearest Refseq: | NM_178011 |
| Nearest Ensembl: | ENSG00000198739 |
| Gene Name: | leucine rich repeat transmembrane neuronal 3 |
| Gene Alias: | - |
| Gene Description: | leucine rich repeat transmembrane neuronal 3 |
| Gene Type: | protein-coding |
| CpG%: | 0.005 |
| GC%: | 0.402985 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "20(AAGTTTTAAAGG,-,0.00),22(GTTTTAAAGGTC,+,0.00)" |
