Difference between revisions of "TSS:Hg 105234.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.09 |distance_to_tss=85 |entrez_id=3189 |gc_percent=0.641791 |gene_alias=2H9|HNRPH3 |gene_description=heterogeneous nuclear ribonucleoprotein H3 |gen...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |HNRPH3= | ||
| + | |all_trans=AK295316:0 ENST00000486854.5:2 uc057tqj.1:2 ENST00000480987.5:-15 uc057tqi.1:-15 ENST00000265866.11:-16 ENST00000467249.1:16 uc001jnw.5:-16 uc057tqk.1:16 BC039824:-16 ENST00000354695.5:21 uc001jnx.5:21 AF132361:21 AK223441:-32 AK291547:-32 NM_021644:-80 NM_012207:-80 L32610:82 ENST00000461310.5:-370 uc057tqh.1:-370 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.09 | |cpg_percent=0.09 | ||
| + | |distance=0 | ||
|distance_to_tss=85 | |distance_to_tss=85 | ||
| + | |end=68332101 | ||
|entrez_id=3189 | |entrez_id=3189 | ||
|gc_percent=0.641791 | |gc_percent=0.641791 | ||
|gene_alias=2H9|HNRPH3 | |gene_alias=2H9|HNRPH3 | ||
|gene_description=heterogeneous nuclear ribonucleoprotein H3 | |gene_description=heterogeneous nuclear ribonucleoprotein H3 | ||
| − | |gene_name=HNRNPH3 | + | |gene_id=3189 |
| + | |gene_name=heterogeneous nuclear ribonucleoprotein H3 | ||
| + | |gene_source=HGNC:5043 | ||
| + | |gene_symbol=HNRNPH3 | ||
| + | |gene_synonyms=2H9 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:5043 | ||
|nearest_ensembl=ENSG00000096746 | |nearest_ensembl=ENSG00000096746 | ||
|nearest_promoter_id=NM_001322439 | |nearest_promoter_id=NM_001322439 | ||
|nearest_refseq=NM_012207 | |nearest_refseq=NM_012207 | ||
|nearest_unigene=Hs.643472 | |nearest_unigene=Hs.643472 | ||
| + | |num_trans=20 | ||
| + | |species=human | ||
| + | |start=68332090 | ||
| + | |strand=+ | ||
| + | |transcript_name=AK295316 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_105234.1 | |tss_id=hg_105234.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=B4DHY1 | ||
}} | }} | ||
Revision as of 21:27, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | AK295316 |
|---|---|
| Distance: | 0 |
| Num_trans: | 20 |
| All_trans: | AK295316:0 ENST00000486854.5:2 uc057tqj.1:2 ENST00000480987.5:-15 uc057tqi.1:-15 ENST00000265866.11:-16 ENST00000467249.1:16 uc001jnw.5:-16 uc057tqk.1:16 BC039824:-16 ENST00000354695.5:21 uc001jnx.5:21 AF132361:21 AK223441:-32 AK291547:-32 NM_021644:-80 NM_012207:-80 L32610:82 ENST00000461310.5:-370 uc057tqh.1:-370 |
TATA-Box annotation
| Distance to TSS: | 85 |
|---|---|
| Nearest PromoterID: | NM_001322439 |
| Entrez ID: | 3189 |
| Nearest Unigene: | Hs.643472 |
| Nearest Refseq: | NM_012207 |
| Nearest Ensembl: | ENSG00000096746 |
| Gene Name: | heterogeneous nuclear ribonucleoprotein H3 |
| Gene Alias: | 2H9 |
| Gene Description: | heterogeneous nuclear ribonucleoprotein H3 |
| Gene Type: | protein-coding |
| CpG%: | 0.09 |
| GC%: | 0.641791 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
