Difference between revisions of "TSS:Hg 10524.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.105 |distance_to_tss=39 |entrez_id=1969 |gc_percent=0.681592 |gene_alias=ARCC2|CTPA|CTPP1|CTRCT6|ECK |gene_description=EPH receptor A2 |gene_name=EP...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |CTPA= | ||
| + | |CTPP1= | ||
| + | |CTRCT6= | ||
| + | |ECK= | ||
| + | |all_trans=AK296788:0 ENST00000358432.7:-6 NM_004431:-6 uc001aya.2:-6 ENST00000461614.1:8 uc057cqn.1:8 BC037166:10 M59371:17 DQ895231:127 EU176326:127 EU826606:128 | ||
| + | |chr=chr1 | ||
|cpg_percent=0.105 | |cpg_percent=0.105 | ||
| + | |distance=0 | ||
|distance_to_tss=39 | |distance_to_tss=39 | ||
| + | |end=16156081 | ||
|entrez_id=1969 | |entrez_id=1969 | ||
|gc_percent=0.681592 | |gc_percent=0.681592 | ||
|gene_alias=ARCC2|CTPA|CTPP1|CTRCT6|ECK | |gene_alias=ARCC2|CTPA|CTPP1|CTRCT6|ECK | ||
|gene_description=EPH receptor A2 | |gene_description=EPH receptor A2 | ||
| − | |gene_name=EPHA2 | + | |gene_id=1969 |
| + | |gene_name=EPH receptor A2 | ||
| + | |gene_source=HGNC:3386 | ||
| + | |gene_symbol=EPHA2 | ||
| + | |gene_synonyms= | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:3386 | ||
|nearest_ensembl=ENSG00000142627 | |nearest_ensembl=ENSG00000142627 | ||
|nearest_promoter_id=NM_001329090 | |nearest_promoter_id=NM_001329090 | ||
|nearest_refseq=NM_004431 | |nearest_refseq=NM_004431 | ||
|nearest_unigene=Hs.171596 | |nearest_unigene=Hs.171596 | ||
| + | |num_trans=11 | ||
| + | |species=human | ||
| + | |start=16156059 | ||
| + | |strand=- | ||
|tata_box="-85(GCCCCTTTAAAG,-,0.00),-84(CCCCTTTAAAGA,-,0.00),-83(CCCTTTAAAGAC,+,0.00),-83(CCCTTTAAAGAC,-,0.00)" | |tata_box="-85(GCCCCTTTAAAG,-,0.00),-84(CCCCTTTAAAGA,-,0.00),-83(CCCTTTAAAGAC,+,0.00),-83(CCCTTTAAAGAC,-,0.00)" | ||
| + | |transcript_name=AK296788 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_10524.1 | |tss_id=hg_10524.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=B4DL04 | ||
}} | }} | ||
Revision as of 21:27, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | AK296788 |
|---|---|
| Distance: | 0 |
| Num_trans: | 11 |
| All_trans: | AK296788:0 ENST00000358432.7:-6 NM_004431:-6 uc001aya.2:-6 ENST00000461614.1:8 uc057cqn.1:8 BC037166:10 M59371:17 DQ895231:127 EU176326:127 EU826606:128 |
TATA-Box annotation
| Distance to TSS: | 39 |
|---|---|
| Nearest PromoterID: | NM_001329090 |
| Entrez ID: | 1969 |
| Nearest Unigene: | Hs.171596 |
| Nearest Refseq: | NM_004431 |
| Nearest Ensembl: | ENSG00000142627 |
| Gene Name: | EPH receptor A2 |
| Gene Alias: | ARCC2 |
| Gene Description: | EPH receptor A2 |
| Gene Type: | protein-coding |
| CpG%: | 0.105 |
| GC%: | 0.681592 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-85(GCCCCTTTAAAG,-,0.00),-84(CCCCTTTAAAGA,-,0.00),-83(CCCTTTAAAGAC,+,0.00),-83(CCCTTTAAAGAC,-,0.00)" |
