Difference between revisions of "TSS:Hg 105259.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.08 |distance_to_tss=-60 |entrez_id=55749 |gc_percent=0.587065 |gene_alias=- |gene_description=cell division cycle and apoptosis regulator 1 |gene_na...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=ENST00000630771.2:49 NM_001282960:49 NM_001282959:49 NM_018237:49 NR_104262:49 uc001jol.3:49 ENST00000536391.5:-61 uc057trn.1:-61 ENST00000265872.10:119 uc001joo.5:119 AK023438:119 AF465616:119 ENST00000538031.5:121 uc057tro.1:121 AK307550:130 ENST00000543719.5:131 uc010qja.3:131 AK298004:131 ENST00000541012.5:132 uc057trp.1:132 BC058846:134 AK001701:141 AY249140:141 ENST00000543229.5:144 ENST00000539539.5:144 uc057trq.1:144 uc057trr.1:144 AK292649:144 AK307704:144 AK122871:144 AK299307:144 ENST00000543225.5:147 ENST00000536012.5:147 uc057trs.1:147 uc057trt.1:147 AK307671:147 BX647943:147 ENST00000494903.2:157 uc057tru.1:157 ENST00000540210.5:160 uc057trv.1:160 BC130626:160 BC132725:160 BC144118:160 BC108682:171 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.08 | |cpg_percent=0.08 | ||
| + | |distance=49 | ||
|distance_to_tss=-60 | |distance_to_tss=-60 | ||
| + | |end=68721095 | ||
|entrez_id=55749 | |entrez_id=55749 | ||
|gc_percent=0.587065 | |gc_percent=0.587065 | ||
|gene_alias=- | |gene_alias=- | ||
|gene_description=cell division cycle and apoptosis regulator 1 | |gene_description=cell division cycle and apoptosis regulator 1 | ||
| − | |gene_name=CCAR1 | + | |gene_id=55749 |
| + | |gene_name=cell division cycle and apoptosis regulator 1 | ||
| + | |gene_source=HGNC:24236 | ||
| + | |gene_symbol=CCAR1 | ||
| + | |gene_synonyms=CARP-1 CARP1 FLJ10590 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:24236 | ||
|nearest_ensembl=ENSG00000060339 | |nearest_ensembl=ENSG00000060339 | ||
|nearest_promoter_id=NM_001282960 | |nearest_promoter_id=NM_001282960 | ||
|nearest_refseq=NM_018237 | |nearest_refseq=NM_018237 | ||
|nearest_unigene=Hs.49853 | |nearest_unigene=Hs.49853 | ||
| + | |num_trans=45 | ||
| + | |species=human | ||
| + | |start=68721072 | ||
| + | |strand=+ | ||
| + | |transcript_name=ENST00000630771.2 NM_001282960 NM_001282959 NM_018237 NR_104262 uc001jol.3 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_105259.1 | |tss_id=hg_105259.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=F5H3E1 Q8IX12 | ||
}} | }} | ||
Revision as of 21:28, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000630771.2 NM_001282960 NM_001282959 NM_018237 NR_104262 uc001jol.3 |
|---|---|
| Distance: | 49 |
| Num_trans: | 45 |
| All_trans: | ENST00000630771.2:49 NM_001282960:49 NM_001282959:49 NM_018237:49 NR_104262:49 uc001jol.3:49 ENST00000536391.5:-61 uc057trn.1:-61 ENST00000265872.10:119 uc001joo.5:119 AK023438:119 AF465616:119 ENST00000538031.5:121 uc057tro.1:121 AK307550:130 ENST00000543719.5:131 uc010qja.3:131 AK298004:131 ENST00000541012.5:132 uc057trp.1:132 BC058846:134 AK001701:141 AY249140:141 ENST00000543229.5:144 ENST00000539539.5:144 uc057trq.1:144 uc057trr.1:144 AK292649:144 AK307704:144 AK122871:144 AK299307:144 ENST00000543225.5:147 ENST00000536012.5:147 uc057trs.1:147 uc057trt.1:147 AK307671:147 BX647943:147 ENST00000494903.2:157 uc057tru.1:157 ENST00000540210.5:160 uc057trv.1:160 BC130626:160 BC132725:160 BC144118:160 BC108682:171 |
TATA-Box annotation
| Distance to TSS: | -60 |
|---|---|
| Nearest PromoterID: | NM_001282960 |
| Entrez ID: | 55749 |
| Nearest Unigene: | Hs.49853 |
| Nearest Refseq: | NM_018237 |
| Nearest Ensembl: | ENSG00000060339 |
| Gene Name: | cell division cycle and apoptosis regulator 1 |
| Gene Alias: | - |
| Gene Description: | cell division cycle and apoptosis regulator 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.08 |
| GC%: | 0.587065 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
