Difference between revisions of "TSS:Hg 105261.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.11 |distance_to_tss=375 |entrez_id=55749 |gc_percent=0.751244 |gene_alias=- |gene_description=cell division cycle and apoptosis regulator 1 |gene_na...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=BC108682:-237 ENST00000540210.5:-248 uc057trv.1:-248 BC130626:-248 BC132725:-248 BC144118:-248 ENST00000494903.2:-251 uc057tru.1:-251 ENST00000543225.5:-261 ENST00000536012.5:-261 uc057trs.1:-261 uc057trt.1:-261 AK307671:-261 BX647943:-261 ENST00000543229.5:-264 ENST00000539539.5:-264 uc057trq.1:-264 uc057trr.1:-264 AK292649:-264 AK307704:-264 AK122871:-264 AK299307:-264 AK001701:-267 AY249140:-267 BC058846:-274 ENST00000541012.5:-276 uc057trp.1:-276 ENST00000543719.5:-277 uc010qja.3:-277 AK298004:-277 AK307550:-278 ENST00000538031.5:-287 uc057tro.1:-287 ENST00000265872.10:-289 uc001joo.5:-289 AK023438:-289 AF465616:-289 ENST00000630771.2:-359 NM_001282960:-359 NM_001282959:-359 NM_018237:-359 NR_104262:-359 uc001jol.3:-359 ENST00000536391.5:-491 uc057trn.1:-491 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.11 | |cpg_percent=0.11 | ||
| + | |distance=-237 | ||
|distance_to_tss=375 | |distance_to_tss=375 | ||
| + | |end=68721535 | ||
|entrez_id=55749 | |entrez_id=55749 | ||
|gc_percent=0.751244 | |gc_percent=0.751244 | ||
|gene_alias=- | |gene_alias=- | ||
|gene_description=cell division cycle and apoptosis regulator 1 | |gene_description=cell division cycle and apoptosis regulator 1 | ||
| − | |gene_name=CCAR1 | + | |gene_id=55749 |
| + | |gene_name=cell division cycle and apoptosis regulator 1 | ||
| + | |gene_source=HGNC:24236 | ||
| + | |gene_symbol=CCAR1 | ||
| + | |gene_synonyms=CARP-1 CARP1 FLJ10590 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:24236 | ||
|nearest_ensembl=ENSG00000060339 | |nearest_ensembl=ENSG00000060339 | ||
|nearest_promoter_id=NM_018237 | |nearest_promoter_id=NM_018237 | ||
|nearest_refseq=NM_018237 | |nearest_refseq=NM_018237 | ||
|nearest_unigene=Hs.49853 | |nearest_unigene=Hs.49853 | ||
| + | |num_trans=45 | ||
| + | |species=human | ||
| + | |start=68721502 | ||
| + | |strand=+ | ||
| + | |transcript_name=BC108682 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_105261.1 | |tss_id=hg_105261.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 21:28, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | BC108682 |
|---|---|
| Distance: | -237 |
| Num_trans: | 45 |
| All_trans: | BC108682:-237 ENST00000540210.5:-248 uc057trv.1:-248 BC130626:-248 BC132725:-248 BC144118:-248 ENST00000494903.2:-251 uc057tru.1:-251 ENST00000543225.5:-261 ENST00000536012.5:-261 uc057trs.1:-261 uc057trt.1:-261 AK307671:-261 BX647943:-261 ENST00000543229.5:-264 ENST00000539539.5:-264 uc057trq.1:-264 uc057trr.1:-264 AK292649:-264 AK307704:-264 AK122871:-264 AK299307:-264 AK001701:-267 AY249140:-267 BC058846:-274 ENST00000541012.5:-276 uc057trp.1:-276 ENST00000543719.5:-277 uc010qja.3:-277 AK298004:-277 AK307550:-278 ENST00000538031.5:-287 uc057tro.1:-287 ENST00000265872.10:-289 uc001joo.5:-289 AK023438:-289 AF465616:-289 ENST00000630771.2:-359 NM_001282960:-359 NM_001282959:-359 NM_018237:-359 NR_104262:-359 uc001jol.3:-359 ENST00000536391.5:-491 uc057trn.1:-491 |
TATA-Box annotation
| Distance to TSS: | 375 |
|---|---|
| Nearest PromoterID: | NM_018237 |
| Entrez ID: | 55749 |
| Nearest Unigene: | Hs.49853 |
| Nearest Refseq: | NM_018237 |
| Nearest Ensembl: | ENSG00000060339 |
| Gene Name: | cell division cycle and apoptosis regulator 1 |
| Gene Alias: | - |
| Gene Description: | cell division cycle and apoptosis regulator 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.11 |
| GC%: | 0.751244 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
