Difference between revisions of "TSS:Hg 105275.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.1 |distance_to_tss=18 |entrez_id=79009 |gc_percent=0.646766 |gene_alias=GU2|GUB|RH-II/GuB|mcdrh |gene_description=DExD-box helicase 50 |gene_name=DD...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |GUB= | ||
| + | |RH-II/GuB= | ||
| + | |all_trans=ENST00000373585.7:0 ENST00000483593.5:0 ENST00000610822.1:0 ENST00000471475.1:0 NM_024045:0 uc001jou.3:0 uc057tse.1:0 uc057tsf.1:0 uc057tsg.1:0 BC000272:0 AK223297:0 AB051075:0 AF334103:0 AK301431:0 AK293577:0 BC014263:0 CU674120:51 DQ892547:51 DQ895758:51 KJ894630:51 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.1 | |cpg_percent=0.1 | ||
| + | |distance=0 | ||
|distance_to_tss=18 | |distance_to_tss=18 | ||
| + | |end=68901334 | ||
|entrez_id=79009 | |entrez_id=79009 | ||
|gc_percent=0.646766 | |gc_percent=0.646766 | ||
|gene_alias=GU2|GUB|RH-II/GuB|mcdrh | |gene_alias=GU2|GUB|RH-II/GuB|mcdrh | ||
|gene_description=DExD-box helicase 50 | |gene_description=DExD-box helicase 50 | ||
| − | |gene_name=DDX50 | + | |gene_id=79009 |
| + | |gene_name=DEAD-box helicase 50 | ||
| + | |gene_source=HGNC:17906 | ||
| + | |gene_symbol=DDX50 | ||
| + | |gene_synonyms=GU2 GUB MGC3199 RH-II/GuB | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:17906 | ||
| + | |mcdrh= | ||
|nearest_ensembl=ENSG00000107625 | |nearest_ensembl=ENSG00000107625 | ||
|nearest_promoter_id=NM_024045 | |nearest_promoter_id=NM_024045 | ||
|nearest_refseq=NM_024045 | |nearest_refseq=NM_024045 | ||
|nearest_unigene=Hs.522984 | |nearest_unigene=Hs.522984 | ||
| + | |num_trans=20 | ||
| + | |species=human | ||
| + | |start=68901258 | ||
| + | |strand=+ | ||
| + | |transcript_name=ENST00000373585.7 ENST00000483593.5 ENST00000610822.1 ENST00000471475.1 NM_024045 uc001jou.3 uc057tse.1 uc057tsf.1 uc057tsg.1 BC000272 AK223297 AB051075 AF334103 AK301431 AK293577 BC014263 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_105275.1 | |tss_id=hg_105275.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=A0A087WVC1 B4DED6 B4DW97 K0J110 Q53FI9 Q9BQ39 S4R3G6 S4R3V4 | ||
}} | }} | ||
Revision as of 21:28, 8 March 2018
Basic information about the TSS
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|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENST00000373585.7 ENST00000483593.5 ENST00000610822.1 ENST00000471475.1 NM_024045 uc001jou.3 uc057tse.1 uc057tsf.1 uc057tsg.1 BC000272 AK223297 AB051075 AF334103 AK301431 AK293577 BC014263 |
|---|---|
| Distance: | 0 |
| Num_trans: | 20 |
| All_trans: | ENST00000373585.7:0 ENST00000483593.5:0 ENST00000610822.1:0 ENST00000471475.1:0 NM_024045:0 uc001jou.3:0 uc057tse.1:0 uc057tsf.1:0 uc057tsg.1:0 BC000272:0 AK223297:0 AB051075:0 AF334103:0 AK301431:0 AK293577:0 BC014263:0 CU674120:51 DQ892547:51 DQ895758:51 KJ894630:51 |
TATA-Box annotation
| Distance to TSS: | 18 |
|---|---|
| Nearest PromoterID: | NM_024045 |
| Entrez ID: | 79009 |
| Nearest Unigene: | Hs.522984 |
| Nearest Refseq: | NM_024045 |
| Nearest Ensembl: | ENSG00000107625 |
| Gene Name: | DEAD-box helicase 50 |
| Gene Alias: | GU2 |
| Gene Description: | DExD-box helicase 50 |
| Gene Type: | protein-coding |
| CpG%: | 0.1 |
| GC%: | 0.646766 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
