Difference between revisions of "TSS:Hg 105301.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.015 |distance_to_tss=79 |entrez_id=5552 |gc_percent=0.467662 |gene_alias=PPG|PRG|PRG1 |gene_description=serglycin |gene_name=SRGN |gene_type=protein...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |PRG= | ||
| + | |PRG1= | ||
| + | |all_trans=ENST00000462445.1:0 uc057tso.1:0 D28395:0 BC022313:0 AK311873:0 ENST00000242465.3:1 uc001joz.4:1 BC015516:1 J03223:10 X17042:24 NM_002727:-25 NR_036430:-25 AB528400:40 CU677333:40 KJ897372:40 DQ894620:-191 DQ891442:-191 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.015 | |cpg_percent=0.015 | ||
| + | |distance=0 | ||
|distance_to_tss=79 | |distance_to_tss=79 | ||
| + | |end=69088117 | ||
|entrez_id=5552 | |entrez_id=5552 | ||
|gc_percent=0.467662 | |gc_percent=0.467662 | ||
|gene_alias=PPG|PRG|PRG1 | |gene_alias=PPG|PRG|PRG1 | ||
|gene_description=serglycin | |gene_description=serglycin | ||
| − | |gene_name=SRGN | + | |gene_id=5552 |
| + | |gene_name=serglycin | ||
| + | |gene_source=HGNC:9361 | ||
| + | |gene_symbol=SRGN | ||
| + | |gene_synonyms=PPG | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:9361 | ||
|nearest_ensembl=ENSG00000122862 | |nearest_ensembl=ENSG00000122862 | ||
|nearest_promoter_id=NM_001321054 | |nearest_promoter_id=NM_001321054 | ||
|nearest_refseq=NM_002727 | |nearest_refseq=NM_002727 | ||
|nearest_unigene=Hs.1908 | |nearest_unigene=Hs.1908 | ||
| + | |num_trans=17 | ||
| + | |species=human | ||
| + | |start=69088096 | ||
| + | |strand=+ | ||
|tata_box="-34(TTTTCTAAAAGG,-,0.00)" | |tata_box="-34(TTTTCTAAAAGG,-,0.00)" | ||
| + | |transcript_name=ENST00000462445.1 uc057tso.1 D28395 BC022313 AK311873 | ||
| + | |tss_classification=no | ||
|tss_id=hg_105301.1 | |tss_id=hg_105301.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 21:29, 8 March 2018
Basic information about the TSS
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|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENST00000462445.1 uc057tso.1 D28395 BC022313 AK311873 |
|---|---|
| Distance: | 0 |
| Num_trans: | 17 |
| All_trans: | ENST00000462445.1:0 uc057tso.1:0 D28395:0 BC022313:0 AK311873:0 ENST00000242465.3:1 uc001joz.4:1 BC015516:1 J03223:10 X17042:24 NM_002727:-25 NR_036430:-25 AB528400:40 CU677333:40 KJ897372:40 DQ894620:-191 DQ891442:-191 |
TATA-Box annotation
| Distance to TSS: | 79 |
|---|---|
| Nearest PromoterID: | NM_001321054 |
| Entrez ID: | 5552 |
| Nearest Unigene: | Hs.1908 |
| Nearest Refseq: | NM_002727 |
| Nearest Ensembl: | ENSG00000122862 |
| Gene Name: | serglycin |
| Gene Alias: | PPG |
| Gene Description: | serglycin |
| Gene Type: | protein-coding |
| CpG%: | 0.015 |
| GC%: | 0.467662 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-34(TTTTCTAAAAGG,-,0.00)" |
