Difference between revisions of "TSS:Hg 105325.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.11 |distance_to_tss=51 |entrez_id=9559 |gc_percent=0.736318 |gene_alias=HB58|Hbeta58|PEP8A|VPS26 |gene_description="VPS26, retromer complex componen...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |Hbeta58= | ||
| + | |PEP8A= | ||
| + | |VPS26= | ||
| + | |all_trans=ENST00000497564.5:0 ENST00000490696.5:0 uc057tss.1:0 uc057tst.1:0 BC022505:0 BX649092:0 AK315496:0 AK297142:0 AF054179:0 AF175266:0 AK309021:0 AK022992:0 BX647725:0 ENST00000467852.1:5 uc057tsu.1:5 AK290536:6 ENST00000489656.5:-12 uc057tsr.1:-12 NM_001035260:-15 NM_001318944:-15 NM_001318945:-15 NM_001318946:-15 NM_004896:-15 ENST00000395098.5:-16 ENST00000263559.10:-16 uc057tsq.1:-16 uc001jpc.4:-16 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.11 | |cpg_percent=0.11 | ||
| + | |distance=0 | ||
|distance_to_tss=51 | |distance_to_tss=51 | ||
| + | |end=69124241 | ||
|entrez_id=9559 | |entrez_id=9559 | ||
|gc_percent=0.736318 | |gc_percent=0.736318 | ||
|gene_alias=HB58|Hbeta58|PEP8A|VPS26 | |gene_alias=HB58|Hbeta58|PEP8A|VPS26 | ||
|gene_description="VPS26, retromer complex component A" | |gene_description="VPS26, retromer complex component A" | ||
| − | |gene_name=VPS26A | + | |gene_id=9559 |
| + | |gene_name=VPS26 retromer complex component A | ||
| + | |gene_source=HGNC:12711 | ||
| + | |gene_symbol=VPS26A | ||
| + | |gene_synonyms=Hbeta58 PEP8A | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:12711 | ||
|nearest_ensembl=ENSG00000122958 | |nearest_ensembl=ENSG00000122958 | ||
|nearest_promoter_id=NM_001318946 | |nearest_promoter_id=NM_001318946 | ||
|nearest_refseq=NM_004896 | |nearest_refseq=NM_004896 | ||
|nearest_unigene=Hs.499925 | |nearest_unigene=Hs.499925 | ||
| + | |num_trans=27 | ||
| + | |species=human | ||
| + | |start=69124167 | ||
| + | |strand=+ | ||
| + | |transcript_name=ENST00000497564.5 ENST00000490696.5 uc057tss.1 uc057tst.1 BC022505 BX649092 AK315496 AK297142 AF054179 AF175266 AK309021 AK022992 BX647725 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_105325.1 | |tss_id=hg_105325.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=B4DLT1 | ||
}} | }} | ||
Revision as of 21:30, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENST00000497564.5 ENST00000490696.5 uc057tss.1 uc057tst.1 BC022505 BX649092 AK315496 AK297142 AF054179 AF175266 AK309021 AK022992 BX647725 |
|---|---|
| Distance: | 0 |
| Num_trans: | 27 |
| All_trans: | ENST00000497564.5:0 ENST00000490696.5:0 uc057tss.1:0 uc057tst.1:0 BC022505:0 BX649092:0 AK315496:0 AK297142:0 AF054179:0 AF175266:0 AK309021:0 AK022992:0 BX647725:0 ENST00000467852.1:5 uc057tsu.1:5 AK290536:6 ENST00000489656.5:-12 uc057tsr.1:-12 NM_001035260:-15 NM_001318944:-15 NM_001318945:-15 NM_001318946:-15 NM_004896:-15 ENST00000395098.5:-16 ENST00000263559.10:-16 uc057tsq.1:-16 uc001jpc.4:-16 |
TATA-Box annotation
| Distance to TSS: | 51 |
|---|---|
| Nearest PromoterID: | NM_001318946 |
| Entrez ID: | 9559 |
| Nearest Unigene: | Hs.499925 |
| Nearest Refseq: | NM_004896 |
| Nearest Ensembl: | ENSG00000122958 |
| Gene Name: | VPS26 retromer complex component A |
| Gene Alias: | HB58 |
| Gene Description: | "VPS26, retromer complex component A" |
| Gene Type: | protein-coding |
| CpG%: | 0.11 |
| GC%: | 0.736318 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
