Difference between revisions of "TSS:Hg 105330.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.105 |distance_to_tss=52 |entrez_id=6832 |gc_percent=0.691542 |gene_alias=SUV3 |gene_description=Suv3 like RNA helicase |gene_name=SUPV3L1 |gene_type...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=ENST00000359655.8:0 ENST00000471069.5:0 ENST00000483572.5:0 uc001jpe.2:0 uc057tsx.1:0 uc057tsy.1:0 BC036112:0 AK299670:0 AK290416:0 ENST00000422378.1:4 uc057tsz.1:4 CU690300:8 DQ894183:8 AF042169:8 DQ891004:8 KJ892230:8 NM_001301683:-24 NM_003171:-24 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.105 | |cpg_percent=0.105 | ||
| + | |distance=0 | ||
|distance_to_tss=52 | |distance_to_tss=52 | ||
| + | |end=69180284 | ||
|entrez_id=6832 | |entrez_id=6832 | ||
|gc_percent=0.691542 | |gc_percent=0.691542 | ||
|gene_alias=SUV3 | |gene_alias=SUV3 | ||
|gene_description=Suv3 like RNA helicase | |gene_description=Suv3 like RNA helicase | ||
| − | |gene_name=SUPV3L1 | + | |gene_id=6832 |
| + | |gene_name=Suv3 like RNA helicase | ||
| + | |gene_source=HGNC:11471 | ||
| + | |gene_symbol=SUPV3L1 | ||
| + | |gene_synonyms=SUV3 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:11471 | ||
|nearest_ensembl=ENSG00000156502 | |nearest_ensembl=ENSG00000156502 | ||
|nearest_promoter_id=NM_001323588 | |nearest_promoter_id=NM_001323588 | ||
|nearest_refseq=NM_003171 | |nearest_refseq=NM_003171 | ||
|nearest_unigene=Hs.106469 | |nearest_unigene=Hs.106469 | ||
| + | |num_trans=18 | ||
| + | |species=human | ||
| + | |start=69180227 | ||
| + | |strand=+ | ||
| + | |transcript_name=ENST00000359655.8 ENST00000471069.5 ENST00000483572.5 uc001jpe.2 uc057tsx.1 uc057tsy.1 BC036112 AK299670 AK290416 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_105330.1 | |tss_id=hg_105330.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=B7Z611 Q8IYB8 | ||
}} | }} | ||
Revision as of 21:31, 8 March 2018
Basic information about the TSS
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|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENST00000359655.8 ENST00000471069.5 ENST00000483572.5 uc001jpe.2 uc057tsx.1 uc057tsy.1 BC036112 AK299670 AK290416 |
|---|---|
| Distance: | 0 |
| Num_trans: | 18 |
| All_trans: | ENST00000359655.8:0 ENST00000471069.5:0 ENST00000483572.5:0 uc001jpe.2:0 uc057tsx.1:0 uc057tsy.1:0 BC036112:0 AK299670:0 AK290416:0 ENST00000422378.1:4 uc057tsz.1:4 CU690300:8 DQ894183:8 AF042169:8 DQ891004:8 KJ892230:8 NM_001301683:-24 NM_003171:-24 |
TATA-Box annotation
| Distance to TSS: | 52 |
|---|---|
| Nearest PromoterID: | NM_001323588 |
| Entrez ID: | 6832 |
| Nearest Unigene: | Hs.106469 |
| Nearest Refseq: | NM_003171 |
| Nearest Ensembl: | ENSG00000156502 |
| Gene Name: | Suv3 like RNA helicase |
| Gene Alias: | SUV3 |
| Gene Description: | Suv3 like RNA helicase |
| Gene Type: | protein-coding |
| CpG%: | 0.105 |
| GC%: | 0.691542 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
