Difference between revisions of "TSS:Hg 105361.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.08 |distance_to_tss=-8 |entrez_id=1305 |gc_percent=0.616915 |gene_alias=CMS19|COLXIIIA1 |gene_description=collagen type XIII alpha 1 chain |gene_nam...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |COLXIIIA1= | ||
| + | |all_trans=NM_080805:3 NM_080800:3 NM_080802:3 NM_080801:3 NM_001130103:3 NM_080798:3 BC139913:31 ENST00000479733.5:46 uc057tui.1:46 ENST00000398978.7:47 ENST00000354547.7:47 ENST00000357811.7:47 uc057tuj.1:47 uc057tuk.1:47 uc057tul.1:47 AJ293624:47 ENST00000520267.5:233 ENST00000398969.7:233 uc057tum.1:233 uc057tun.1:233 BC136385:233 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.08 | |cpg_percent=0.08 | ||
| + | |distance=3 | ||
|distance_to_tss=-8 | |distance_to_tss=-8 | ||
| + | |end=69801885 | ||
|entrez_id=1305 | |entrez_id=1305 | ||
|gc_percent=0.616915 | |gc_percent=0.616915 | ||
|gene_alias=CMS19|COLXIIIA1 | |gene_alias=CMS19|COLXIIIA1 | ||
|gene_description=collagen type XIII alpha 1 chain | |gene_description=collagen type XIII alpha 1 chain | ||
| − | |gene_name=COL13A1 | + | |gene_id=1305 |
| + | |gene_name=collagen type XIII alpha 1 | ||
| + | |gene_source=HGNC:2190 | ||
| + | |gene_symbol=COL13A1 | ||
| + | |gene_synonyms= | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:2190 | ||
|nearest_ensembl=ENSG00000197467 | |nearest_ensembl=ENSG00000197467 | ||
|nearest_promoter_id=NM_080802 | |nearest_promoter_id=NM_080802 | ||
|nearest_refseq=NM_005203 | |nearest_refseq=NM_005203 | ||
|nearest_unigene=Hs.695934 | |nearest_unigene=Hs.695934 | ||
| + | |num_trans=21 | ||
| + | |species=human | ||
| + | |start=69801874 | ||
| + | |strand=+ | ||
| + | |transcript_name=NM_080805 NM_080800 NM_080802 NM_080801 NM_001130103 NM_080798 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_105361.1 | |tss_id=hg_105361.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=Q5TAT6 | ||
}} | }} | ||
Revision as of 21:32, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | NM_080805 NM_080800 NM_080802 NM_080801 NM_001130103 NM_080798 |
|---|---|
| Distance: | 3 |
| Num_trans: | 21 |
| All_trans: | NM_080805:3 NM_080800:3 NM_080802:3 NM_080801:3 NM_001130103:3 NM_080798:3 BC139913:31 ENST00000479733.5:46 uc057tui.1:46 ENST00000398978.7:47 ENST00000354547.7:47 ENST00000357811.7:47 uc057tuj.1:47 uc057tuk.1:47 uc057tul.1:47 AJ293624:47 ENST00000520267.5:233 ENST00000398969.7:233 uc057tum.1:233 uc057tun.1:233 BC136385:233 |
TATA-Box annotation
| Distance to TSS: | -8 |
|---|---|
| Nearest PromoterID: | NM_080802 |
| Entrez ID: | 1305 |
| Nearest Unigene: | Hs.695934 |
| Nearest Refseq: | NM_005203 |
| Nearest Ensembl: | ENSG00000197467 |
| Gene Name: | collagen type XIII alpha 1 |
| Gene Alias: | CMS19 |
| Gene Description: | collagen type XIII alpha 1 chain |
| Gene Type: | protein-coding |
| CpG%: | 0.08 |
| GC%: | 0.616915 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
