Difference between revisions of "TSS:Hg 105369.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.015 |distance_to_tss=94288 |entrez_id=1305 |gc_percent=0.517413 |gene_alias=CMS19|COLXIIIA1 |gene_description=collagen type XIII alpha 1 chain |gene...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |COLXIIIA1= | ||
| + | |chr=chr10 | ||
|cpg_percent=0.015 | |cpg_percent=0.015 | ||
| + | |distance= | ||
|distance_to_tss=94288 | |distance_to_tss=94288 | ||
| + | |end=69896177 | ||
|entrez_id=1305 | |entrez_id=1305 | ||
|gc_percent=0.517413 | |gc_percent=0.517413 | ||
| Line 12: | Line 16: | ||
|nearest_refseq=NM_005203 | |nearest_refseq=NM_005203 | ||
|nearest_unigene=Hs.695934 | |nearest_unigene=Hs.695934 | ||
| + | |num_trans=0 | ||
| + | |species=human | ||
| + | |start=69896174 | ||
| + | |strand=+ | ||
|tata_box="-33(CTCTTTAAAAGC,-,0.00),-32(TCTTTAAAAGCA,+,0.00)" | |tata_box="-33(CTCTTTAAAAGC,-,0.00),-32(TCTTTAAAAGCA,+,0.00)" | ||
| + | |transcript_name= | ||
| + | |tss_classification=no | ||
|tss_id=hg_105369.1 | |tss_id=hg_105369.1 | ||
| + | |tss_score=1 | ||
}} | }} | ||
Revision as of 21:32, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | |
|---|---|
| Distance: | |
| Num_trans: | 0 |
| All_trans: |
TATA-Box annotation
| Distance to TSS: | 94288 |
|---|---|
| Nearest PromoterID: | NM_080805 |
| Entrez ID: | 1305 |
| Nearest Unigene: | Hs.695934 |
| Nearest Refseq: | NM_005203 |
| Nearest Ensembl: | ENSG00000197467 |
| Gene Name: | COL13A1 |
| Gene Alias: | CMS19 |
| Gene Description: | collagen type XIII alpha 1 chain |
| Gene Type: | protein-coding |
| CpG%: | 0.015 |
| GC%: | 0.517413 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-33(CTCTTTAAAAGC,-,0.00),-32(TCTTTAAAAGCA,+,0.00)" |
