Difference between revisions of "TSS:Hg 105373.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.08 |distance_to_tss=-14 |entrez_id=55506 |gc_percent=0.597015 |gene_alias=macroH2A2 |gene_description=H2A histone family member Y2 |gene_name=H2AFY2...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=NM_018649:9 ENST00000373255.8:204 uc001jqm.4:204 BC016172:253 AK022776:254 AK131057:258 AF151534:269 AF336304:277 AK022475:285 ENST00000455786.1:288 uc057tuy.1:288 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.08 | |cpg_percent=0.08 | ||
| + | |distance=9 | ||
|distance_to_tss=-14 | |distance_to_tss=-14 | ||
| + | |end=70052592 | ||
|entrez_id=55506 | |entrez_id=55506 | ||
|gc_percent=0.597015 | |gc_percent=0.597015 | ||
|gene_alias=macroH2A2 | |gene_alias=macroH2A2 | ||
|gene_description=H2A histone family member Y2 | |gene_description=H2A histone family member Y2 | ||
| − | |gene_name=H2AFY2 | + | |gene_id=55506 |
| + | |gene_name=H2A histone family member Y2 | ||
| + | |gene_source=HGNC:14453 | ||
| + | |gene_symbol=H2AFY2 | ||
| + | |gene_synonyms=macroH2A2 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:14453 | ||
|nearest_ensembl=ENSG00000099284 | |nearest_ensembl=ENSG00000099284 | ||
|nearest_promoter_id=NM_018649 | |nearest_promoter_id=NM_018649 | ||
|nearest_refseq=NM_018649 | |nearest_refseq=NM_018649 | ||
|nearest_unigene=Hs.499953 | |nearest_unigene=Hs.499953 | ||
| + | |num_trans=11 | ||
| + | |species=human | ||
| + | |start=70052581 | ||
| + | |strand=+ | ||
|tata_box="84(CCATTAATACTC,+,0.00)" | |tata_box="84(CCATTAATACTC,+,0.00)" | ||
| + | |transcript_name=NM_018649 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_105373.1 | |tss_id=hg_105373.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=Q9P0M6 | ||
}} | }} | ||
Revision as of 21:32, 8 March 2018
Basic information about the TSS
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|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | NM_018649 |
|---|---|
| Distance: | 9 |
| Num_trans: | 11 |
| All_trans: | NM_018649:9 ENST00000373255.8:204 uc001jqm.4:204 BC016172:253 AK022776:254 AK131057:258 AF151534:269 AF336304:277 AK022475:285 ENST00000455786.1:288 uc057tuy.1:288 |
TATA-Box annotation
| Distance to TSS: | -14 |
|---|---|
| Nearest PromoterID: | NM_018649 |
| Entrez ID: | 55506 |
| Nearest Unigene: | Hs.499953 |
| Nearest Refseq: | NM_018649 |
| Nearest Ensembl: | ENSG00000099284 |
| Gene Name: | H2A histone family member Y2 |
| Gene Alias: | macroH2A2 |
| Gene Description: | H2A histone family member Y2 |
| Gene Type: | protein-coding |
| CpG%: | 0.08 |
| GC%: | 0.597015 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "84(CCATTAATACTC,+,0.00)" |
