Difference between revisions of "TSS:Hg 105375.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.065 |distance_to_tss=254 |entrez_id=55506 |gc_percent=0.631841 |gene_alias=macroH2A2 |gene_description=H2A histone family member Y2 |gene_name=H2AFY...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=ENST00000455786.1:0 uc057tuy.1:0 BC016172:0 AK022776:0 AK131057:0 AF151534:0 AF336304:0 AK022475:0 ENST00000373255.8:-26 uc001jqm.4:-26 NM_018649:-221 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.065 | |cpg_percent=0.065 | ||
| + | |distance=0 | ||
|distance_to_tss=254 | |distance_to_tss=254 | ||
| + | |end=70052888 | ||
|entrez_id=55506 | |entrez_id=55506 | ||
|gc_percent=0.631841 | |gc_percent=0.631841 | ||
|gene_alias=macroH2A2 | |gene_alias=macroH2A2 | ||
|gene_description=H2A histone family member Y2 | |gene_description=H2A histone family member Y2 | ||
| − | |gene_name=H2AFY2 | + | |gene_id=55506 |
| + | |gene_name=H2A histone family member Y2 | ||
| + | |gene_source=HGNC:14453 | ||
| + | |gene_symbol=H2AFY2 | ||
| + | |gene_synonyms=macroH2A2 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:14453 | ||
|nearest_ensembl=ENSG00000099284 | |nearest_ensembl=ENSG00000099284 | ||
|nearest_promoter_id=NM_018649 | |nearest_promoter_id=NM_018649 | ||
|nearest_refseq=NM_018649 | |nearest_refseq=NM_018649 | ||
|nearest_unigene=Hs.499953 | |nearest_unigene=Hs.499953 | ||
| + | |num_trans=11 | ||
| + | |species=human | ||
| + | |start=70052821 | ||
| + | |strand=+ | ||
| + | |transcript_name=ENST00000455786.1 uc057tuy.1 BC016172 AK022776 AK131057 AF151534 AF336304 AK022475 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_105375.1 | |tss_id=hg_105375.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=Q5SQT3 Q9HA11 | ||
}} | }} | ||
Revision as of 21:32, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000455786.1 uc057tuy.1 BC016172 AK022776 AK131057 AF151534 AF336304 AK022475 |
|---|---|
| Distance: | 0 |
| Num_trans: | 11 |
| All_trans: | ENST00000455786.1:0 uc057tuy.1:0 BC016172:0 AK022776:0 AK131057:0 AF151534:0 AF336304:0 AK022475:0 ENST00000373255.8:-26 uc001jqm.4:-26 NM_018649:-221 |
TATA-Box annotation
| Distance to TSS: | 254 |
|---|---|
| Nearest PromoterID: | NM_018649 |
| Entrez ID: | 55506 |
| Nearest Unigene: | Hs.499953 |
| Nearest Refseq: | NM_018649 |
| Nearest Ensembl: | ENSG00000099284 |
| Gene Name: | H2A histone family member Y2 |
| Gene Alias: | macroH2A2 |
| Gene Description: | H2A histone family member Y2 |
| Gene Type: | protein-coding |
| CpG%: | 0.065 |
| GC%: | 0.631841 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
