Difference between revisions of "TSS:Hg 105398.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.01 |distance_to_tss=-7528 |entrez_id=5551 |gc_percent=0.462687 |gene_alias=FLH2|HPLH2|P1|PFN1|PFP |gene_description=perforin 1 |gene_name=PRF1 |gene...") |
|||
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| + | |HPLH2= | ||
| + | |P1= | ||
| + | |PFN1= | ||
| + | |PFP= | ||
| + | |all_trans=BC009051:9 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.01 | |cpg_percent=0.01 | ||
| + | |distance=9 | ||
|distance_to_tss=-7528 | |distance_to_tss=-7528 | ||
| + | |end=70610308 | ||
|entrez_id=5551 | |entrez_id=5551 | ||
|gc_percent=0.462687 | |gc_percent=0.462687 | ||
| Line 12: | Line 20: | ||
|nearest_refseq=NM_005041 | |nearest_refseq=NM_005041 | ||
|nearest_unigene=Hs.2200 | |nearest_unigene=Hs.2200 | ||
| + | |num_trans=1 | ||
| + | |species=human | ||
| + | |start=70610298 | ||
| + | |strand=+ | ||
|tata_box="-37(GCCCTTATAAAA,-,0.00),-35(CCTTATAAAAGG,+,0.00),-35(CCTTATAAAAGG,-,0.00)" | |tata_box="-37(GCCCTTATAAAA,-,0.00),-35(CCTTATAAAAGG,+,0.00),-35(CCTTATAAAAGG,-,0.00)" | ||
| + | |transcript_name=BC009051 | ||
| + | |tss_classification=no | ||
|tss_id=hg_105398.1 | |tss_id=hg_105398.1 | ||
| + | |tss_score=1 | ||
}} | }} | ||
Revision as of 21:33, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | BC009051 |
|---|---|
| Distance: | 9 |
| Num_trans: | 1 |
| All_trans: | BC009051:9 |
TATA-Box annotation
| Distance to TSS: | -7528 |
|---|---|
| Nearest PromoterID: | NM_005041 |
| Entrez ID: | 5551 |
| Nearest Unigene: | Hs.2200 |
| Nearest Refseq: | NM_005041 |
| Nearest Ensembl: | ENSG00000180644 |
| Gene Name: | PRF1 |
| Gene Alias: | FLH2 |
| Gene Description: | perforin 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.01 |
| GC%: | 0.462687 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-37(GCCCTTATAAAA,-,0.00),-35(CCTTATAAAAGG,+,0.00),-35(CCTTATAAAAGG,-,0.00)" |
