Difference between revisions of "TSS:Hg 105470.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.075 |distance_to_tss=-116 |entrez_id=9469 |gc_percent=0.726368 |gene_alias=C6ST|C6ST1|HSD |gene_description=carbohydrate sulfotransferase 3 |gene_na...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |C6ST1= | ||
| + | |HSD= | ||
| + | |all_trans=NM_004273:78 AB017915:78 ENST00000373115.4:81 uc001jsn.4:81 AB012192:81 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.075 | |cpg_percent=0.075 | ||
| + | |distance=78 | ||
|distance_to_tss=-116 | |distance_to_tss=-116 | ||
| + | |end=71964284 | ||
|entrez_id=9469 | |entrez_id=9469 | ||
|gc_percent=0.726368 | |gc_percent=0.726368 | ||
|gene_alias=C6ST|C6ST1|HSD | |gene_alias=C6ST|C6ST1|HSD | ||
|gene_description=carbohydrate sulfotransferase 3 | |gene_description=carbohydrate sulfotransferase 3 | ||
| − | |gene_name=CHST3 | + | |gene_id=9469 |
| + | |gene_name=carbohydrate (chondroitin 6) sulfotransferase 3 | ||
| + | |gene_source=HGNC:1971 | ||
| + | |gene_symbol=CHST3 | ||
| + | |gene_synonyms=C6ST C6ST1 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:1971 | ||
|nearest_ensembl=ENSG00000122863 | |nearest_ensembl=ENSG00000122863 | ||
|nearest_promoter_id=NM_004273 | |nearest_promoter_id=NM_004273 | ||
|nearest_refseq=NM_004273 | |nearest_refseq=NM_004273 | ||
|nearest_unigene=Hs.158304 | |nearest_unigene=Hs.158304 | ||
| + | |num_trans=5 | ||
| + | |species=human | ||
| + | |start=71964207 | ||
| + | |strand=+ | ||
| + | |transcript_name=NM_004273 AB017915 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_105470.1 | |tss_id=hg_105470.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=Q7LGC8 | ||
}} | }} | ||
Revision as of 21:37, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | NM_004273 AB017915 |
|---|---|
| Distance: | 78 |
| Num_trans: | 5 |
| All_trans: | NM_004273:78 AB017915:78 ENST00000373115.4:81 uc001jsn.4:81 AB012192:81 |
TATA-Box annotation
| Distance to TSS: | -116 |
|---|---|
| Nearest PromoterID: | NM_004273 |
| Entrez ID: | 9469 |
| Nearest Unigene: | Hs.158304 |
| Nearest Refseq: | NM_004273 |
| Nearest Ensembl: | ENSG00000122863 |
| Gene Name: | carbohydrate (chondroitin 6) sulfotransferase 3 |
| Gene Alias: | C6ST |
| Gene Description: | carbohydrate sulfotransferase 3 |
| Gene Type: | protein-coding |
| CpG%: | 0.075 |
| GC%: | 0.726368 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
