Difference between revisions of "TSS:Hg 10548.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.055 |distance_to_tss=4996 |entrez_id=100500876 |gc_percent=0.517413 |gene_alias=- |gene_description=microRNA 3675 |gene_name=MIR3675 |gene_type=ncRN...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=ENST00000419267.1:196 | ||
| + | |chr=chr1 | ||
|cpg_percent=0.055 | |cpg_percent=0.055 | ||
| + | |distance=196 | ||
|distance_to_tss=4996 | |distance_to_tss=4996 | ||
| + | |end=16686251 | ||
|entrez_id=100500876 | |entrez_id=100500876 | ||
|gc_percent=0.517413 | |gc_percent=0.517413 | ||
|gene_alias=- | |gene_alias=- | ||
|gene_description=microRNA 3675 | |gene_description=microRNA 3675 | ||
| − | |gene_name= | + | |gene_id= |
| + | |gene_name="eukaryotic translation initiation factor 1A, X-linked pseudogene 1" | ||
| + | |gene_source=HGNC:19900 | ||
| + | |gene_symbol=EIF1AXP1 | ||
| + | |gene_synonyms= | ||
|gene_type=ncRNA | |gene_type=ncRNA | ||
| + | |hgnc_mgi_id=HGNC:19900 | ||
|nearest_ensembl=ENSG00000263811 | |nearest_ensembl=ENSG00000263811 | ||
|nearest_promoter_id=NR_037446 | |nearest_promoter_id=NR_037446 | ||
|nearest_refseq=NR_037446 | |nearest_refseq=NR_037446 | ||
|nearest_unigene= | |nearest_unigene= | ||
| + | |num_trans=1 | ||
| + | |species=human | ||
| + | |start=16686250 | ||
| + | |strand=- | ||
|tata_box="-56(CATTATAAAAGG,-,0.00)" | |tata_box="-56(CATTATAAAAGG,-,0.00)" | ||
| + | |transcript_name=ENST00000419267.1 | ||
| + | |tss_classification=no | ||
|tss_id=hg_10548.1 | |tss_id=hg_10548.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 21:37, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENST00000419267.1 |
|---|---|
| Distance: | 196 |
| Num_trans: | 1 |
| All_trans: | ENST00000419267.1:196 |
TATA-Box annotation
| Distance to TSS: | 4996 |
|---|---|
| Nearest PromoterID: | NR_037446 |
| Entrez ID: | 100500876 |
| Nearest Unigene: | |
| Nearest Refseq: | NR_037446 |
| Nearest Ensembl: | ENSG00000263811 |
| Gene Name: | "eukaryotic translation initiation factor 1A, X-linked pseudogene 1" |
| Gene Alias: | - |
| Gene Description: | microRNA 3675 |
| Gene Type: | ncRNA |
| CpG%: | 0.055 |
| GC%: | 0.517413 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-56(CATTATAAAAGG,-,0.00)" |
