Difference between revisions of "TSS:Hg 105485.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.07 |distance_to_tss=88 |entrez_id=51008 |gc_percent=0.636816 |gene_alias=ASC1p50|CGI-18|SMABF2|p50 |gene_description=activating signal cointegrator...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |CGI-18= | ||
| + | |SMABF2= | ||
| + | |all_trans=ENST00000299381.4:-299 uc001jsv.4:-299 BC009530:-299 EU552924:-306 ENST00000478193.5:-318 uc021psq.2:-318 ENST00000615507.4:-347 ENST00000621663.4:-347 NM_001242548:-347 NM_001242547:-347 NR_038391:-347 NM_001242546:-347 NM_173473:-347 NR_038392:-347 uc021pss.2:-347 uc001jsw.4:-347 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.07 | |cpg_percent=0.07 | ||
| + | |distance=-299 | ||
|distance_to_tss=88 | |distance_to_tss=88 | ||
| + | |end=72216359 | ||
|entrez_id=51008 | |entrez_id=51008 | ||
|gc_percent=0.636816 | |gc_percent=0.636816 | ||
|gene_alias=ASC1p50|CGI-18|SMABF2|p50 | |gene_alias=ASC1p50|CGI-18|SMABF2|p50 | ||
|gene_description=activating signal cointegrator 1 complex subunit 1 | |gene_description=activating signal cointegrator 1 complex subunit 1 | ||
| − | |gene_name= | + | |gene_id=119504 |
| + | |gene_name=anaphase promoting complex subunit 16 | ||
| + | |gene_source=HGNC:26976 | ||
| + | |gene_symbol=ANAPC16 | ||
| + | |gene_synonyms=APC16 CENP-27 FLJ33728 bA570G20.3 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:26976 | ||
|nearest_ensembl=ENSG00000138303 | |nearest_ensembl=ENSG00000138303 | ||
|nearest_promoter_id=NM_001198799 | |nearest_promoter_id=NM_001198799 | ||
|nearest_refseq=NM_015947 | |nearest_refseq=NM_015947 | ||
|nearest_unigene=Hs.500007 | |nearest_unigene=Hs.500007 | ||
| + | |num_trans=16 | ||
| + | |p50= | ||
| + | |species=human | ||
| + | |start=72216346 | ||
| + | |strand=+ | ||
| + | |transcript_name=ENST00000299381.4 uc001jsv.4 BC009530 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_105485.1 | |tss_id=hg_105485.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=C5H3H2 Q96DE5 | ||
}} | }} | ||
Revision as of 21:37, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENST00000299381.4 uc001jsv.4 BC009530 |
|---|---|
| Distance: | -299 |
| Num_trans: | 16 |
| All_trans: | ENST00000299381.4:-299 uc001jsv.4:-299 BC009530:-299 EU552924:-306 ENST00000478193.5:-318 uc021psq.2:-318 ENST00000615507.4:-347 ENST00000621663.4:-347 NM_001242548:-347 NM_001242547:-347 NR_038391:-347 NM_001242546:-347 NM_173473:-347 NR_038392:-347 uc021pss.2:-347 uc001jsw.4:-347 |
TATA-Box annotation
| Distance to TSS: | 88 |
|---|---|
| Nearest PromoterID: | NM_001198799 |
| Entrez ID: | 51008 |
| Nearest Unigene: | Hs.500007 |
| Nearest Refseq: | NM_015947 |
| Nearest Ensembl: | ENSG00000138303 |
| Gene Name: | anaphase promoting complex subunit 16 |
| Gene Alias: | ASC1p50 |
| Gene Description: | activating signal cointegrator 1 complex subunit 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.07 |
| GC%: | 0.636816 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
