Difference between revisions of "TSS:Hg 105491.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.095 |distance_to_tss=3 |entrez_id=54541 |gc_percent=0.691542 |gene_alias=Dig2|REDD-1|REDD1 |gene_description=DNA damage inducible transcript 4 |gene...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |REDD-1= | ||
| + | |REDD1= | ||
| + | |all_trans=ENST00000307365.3:0 ENST00000473155.1:0 NM_019058:0 uc001jsx.2:0 uc057tya.1:0 AL136668:0 AK000507:0 BC007714:1 AF335324:6 BC015236:15 AY090097:72 ENST00000471240.1:89 uc057tyb.1:89 BC000708:92 AM392607:283 DQ890984:283 DQ894159:283 AB587474:285 KJ894039:286 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.095 | |cpg_percent=0.095 | ||
| + | |distance=0 | ||
|distance_to_tss=3 | |distance_to_tss=3 | ||
| + | |end=72273930 | ||
|entrez_id=54541 | |entrez_id=54541 | ||
|gc_percent=0.691542 | |gc_percent=0.691542 | ||
|gene_alias=Dig2|REDD-1|REDD1 | |gene_alias=Dig2|REDD-1|REDD1 | ||
|gene_description=DNA damage inducible transcript 4 | |gene_description=DNA damage inducible transcript 4 | ||
| − | |gene_name=DDIT4 | + | |gene_id=54541 |
| + | |gene_name=DNA damage inducible transcript 4 | ||
| + | |gene_source=HGNC:24944 | ||
| + | |gene_symbol=DDIT4 | ||
| + | |gene_synonyms=Dig2 FLJ20500 REDD-1 REDD1 RTP801 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:24944 | ||
|nearest_ensembl=ENSG00000168209 | |nearest_ensembl=ENSG00000168209 | ||
|nearest_promoter_id=NM_019058 | |nearest_promoter_id=NM_019058 | ||
|nearest_refseq=NM_019058 | |nearest_refseq=NM_019058 | ||
|nearest_unigene=Hs.744875 | |nearest_unigene=Hs.744875 | ||
| + | |num_trans=19 | ||
| + | |species=human | ||
| + | |start=72273914 | ||
| + | |strand=+ | ||
|tata_box="-32(GTCCTTATAGGC,-,0.00),-30(CCTTATAGGCTG,+,0.00)" | |tata_box="-32(GTCCTTATAGGC,-,0.00),-30(CCTTATAGGCTG,+,0.00)" | ||
| + | |transcript_name=ENST00000307365.3 ENST00000473155.1 NM_019058 uc001jsx.2 uc057tya.1 AL136668 AK000507 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_105491.1 | |tss_id=hg_105491.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=A0A024QZQ6 Q9NX09 | ||
}} | }} | ||
Revision as of 21:37, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000307365.3 ENST00000473155.1 NM_019058 uc001jsx.2 uc057tya.1 AL136668 AK000507 |
|---|---|
| Distance: | 0 |
| Num_trans: | 19 |
| All_trans: | ENST00000307365.3:0 ENST00000473155.1:0 NM_019058:0 uc001jsx.2:0 uc057tya.1:0 AL136668:0 AK000507:0 BC007714:1 AF335324:6 BC015236:15 AY090097:72 ENST00000471240.1:89 uc057tyb.1:89 BC000708:92 AM392607:283 DQ890984:283 DQ894159:283 AB587474:285 KJ894039:286 |
TATA-Box annotation
| Distance to TSS: | 3 |
|---|---|
| Nearest PromoterID: | NM_019058 |
| Entrez ID: | 54541 |
| Nearest Unigene: | Hs.744875 |
| Nearest Refseq: | NM_019058 |
| Nearest Ensembl: | ENSG00000168209 |
| Gene Name: | DNA damage inducible transcript 4 |
| Gene Alias: | Dig2 |
| Gene Description: | DNA damage inducible transcript 4 |
| Gene Type: | protein-coding |
| CpG%: | 0.095 |
| GC%: | 0.691542 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-32(GTCCTTATAGGC,-,0.00),-30(CCTTATAGGCTG,+,0.00)" |
