Difference between revisions of "TSS:Hg 105513.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.125 |distance_to_tss=9 |entrez_id=90550 |gc_percent=0.716418 |gene_alias=C10orf42|CCDC109A|HsMCU |gene_description=mitochondrial calcium uniporter |...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |CCDC109A= | ||
| + | |HsMCU= | ||
| + | |all_trans=ENST00000373053.7:0 ENST00000603649.5:0 ENST00000604372.5:0 ENST00000604679.5:0 ENST00000357157.10:0 NM_138357:0 NR_073062:0 NM_001270679:0 uc001jtc.3:0 uc057tyt.1:0 uc057tyu.1:0 uc057tyv.1:0 uc009xqr.4:0 BC034235:0 AK311133:0 AK310455:0 AK075439:0 AK315519:0 AK301475:0 JF432665:0 BC010682:20 ENST00000605597.5:465 ENST00000536019.5:465 NM_001270680:465 uc001jtd.4:465 uc057tyw.1:465 AK128016:465 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.125 | |cpg_percent=0.125 | ||
| + | |distance=0 | ||
|distance_to_tss=9 | |distance_to_tss=9 | ||
| + | |end=72692154 | ||
|entrez_id=90550 | |entrez_id=90550 | ||
|gc_percent=0.716418 | |gc_percent=0.716418 | ||
|gene_alias=C10orf42|CCDC109A|HsMCU | |gene_alias=C10orf42|CCDC109A|HsMCU | ||
|gene_description=mitochondrial calcium uniporter | |gene_description=mitochondrial calcium uniporter | ||
| − | |gene_name=MCU | + | |gene_id=90550 |
| + | |gene_name=mitochondrial calcium uniporter | ||
| + | |gene_source=HGNC:23526 | ||
| + | |gene_symbol=MCU | ||
| + | |gene_synonyms=FLJ46135 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:23526 | ||
|nearest_ensembl=ENSG00000156026 | |nearest_ensembl=ENSG00000156026 | ||
|nearest_promoter_id=NM_138357 | |nearest_promoter_id=NM_138357 | ||
|nearest_refseq=NM_138357 | |nearest_refseq=NM_138357 | ||
|nearest_unigene=Hs.591366 | |nearest_unigene=Hs.591366 | ||
| + | |num_trans=27 | ||
| + | |species=human | ||
| + | |start=72692125 | ||
| + | |strand=+ | ||
| + | |transcript_name=ENST00000373053.7 ENST00000603649.5 ENST00000604372.5 ENST00000604679.5 ENST00000357157.10 NM_138357 NR_073062 NM_001270679 uc001jtc.3 uc057tyt.1 uc057tyu.1 uc057tyv.1 uc009xqr.4 BC034235 AK311133 AK310455 AK075439 AK315519 AK301475 JF432665 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_105513.1 | |tss_id=hg_105513.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=B4DWD0 Q8NE86 S4R319 S4R3F5 S4R3W8 | ||
}} | }} | ||
Revision as of 21:38, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENST00000373053.7 ENST00000603649.5 ENST00000604372.5 ENST00000604679.5 ENST00000357157.10 NM_138357 NR_073062 NM_001270679 uc001jtc.3 uc057tyt.1 uc057tyu.1 uc057tyv.1 uc009xqr.4 BC034235 AK311133 AK310455 AK075439 AK315519 AK301475 JF432665 |
|---|---|
| Distance: | 0 |
| Num_trans: | 27 |
| All_trans: | ENST00000373053.7:0 ENST00000603649.5:0 ENST00000604372.5:0 ENST00000604679.5:0 ENST00000357157.10:0 NM_138357:0 NR_073062:0 NM_001270679:0 uc001jtc.3:0 uc057tyt.1:0 uc057tyu.1:0 uc057tyv.1:0 uc009xqr.4:0 BC034235:0 AK311133:0 AK310455:0 AK075439:0 AK315519:0 AK301475:0 JF432665:0 BC010682:20 ENST00000605597.5:465 ENST00000536019.5:465 NM_001270680:465 uc001jtd.4:465 uc057tyw.1:465 AK128016:465 |
TATA-Box annotation
| Distance to TSS: | 9 |
|---|---|
| Nearest PromoterID: | NM_138357 |
| Entrez ID: | 90550 |
| Nearest Unigene: | Hs.591366 |
| Nearest Refseq: | NM_138357 |
| Nearest Ensembl: | ENSG00000156026 |
| Gene Name: | mitochondrial calcium uniporter |
| Gene Alias: | C10orf42 |
| Gene Description: | mitochondrial calcium uniporter |
| Gene Type: | protein-coding |
| CpG%: | 0.125 |
| GC%: | 0.716418 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
