Difference between revisions of "TSS:Hg 105519.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.015 |distance_to_tss=229 |entrez_id=170392 |gc_percent=0.487562 |gene_alias=LZP |gene_description=oncoprotein induced transcript 3 |gene_name=OIT3 |...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=KJ903964:10 HQ258178:10 AY013707:-56 AY358339:-178 ENST00000622652.1:-197 uc057tze.1:-197 BC126440:-197 ENST00000334011.9:-200 uc001jte.2:-200 AK096435:-200 NM_152635:-225 NR_130125:-225 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.015 | |cpg_percent=0.015 | ||
| + | |distance=10 | ||
|distance_to_tss=229 | |distance_to_tss=229 | ||
| + | |end=72893789 | ||
|entrez_id=170392 | |entrez_id=170392 | ||
|gc_percent=0.487562 | |gc_percent=0.487562 | ||
| Line 12: | Line 16: | ||
|nearest_refseq=NM_152635 | |nearest_refseq=NM_152635 | ||
|nearest_unigene=Hs.8366 | |nearest_unigene=Hs.8366 | ||
| + | |num_trans=12 | ||
| + | |species=human | ||
| + | |start=72893780 | ||
| + | |strand=+ | ||
|tata_box="-80(GGCCTTAAAAAA,-,0.00)" | |tata_box="-80(GGCCTTAAAAAA,-,0.00)" | ||
| + | |transcript_name=KJ903964 HQ258178 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_105519.1 | |tss_id=hg_105519.1 | ||
| + | |tss_score=1 | ||
}} | }} | ||
Revision as of 21:39, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | KJ903964 HQ258178 |
|---|---|
| Distance: | 10 |
| Num_trans: | 12 |
| All_trans: | KJ903964:10 HQ258178:10 AY013707:-56 AY358339:-178 ENST00000622652.1:-197 uc057tze.1:-197 BC126440:-197 ENST00000334011.9:-200 uc001jte.2:-200 AK096435:-200 NM_152635:-225 NR_130125:-225 |
TATA-Box annotation
| Distance to TSS: | 229 |
|---|---|
| Nearest PromoterID: | NR_130125 |
| Entrez ID: | 170392 |
| Nearest Unigene: | Hs.8366 |
| Nearest Refseq: | NM_152635 |
| Nearest Ensembl: | ENSG00000138315 |
| Gene Name: | OIT3 |
| Gene Alias: | LZP |
| Gene Description: | oncoprotein induced transcript 3 |
| Gene Type: | protein-coding |
| CpG%: | 0.015 |
| GC%: | 0.487562 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-80(GGCCTTAAAAAA,-,0.00)" |
