Difference between revisions of "TSS:Hg 105561.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.03 |distance_to_tss=-359 |entrez_id=5328 |gc_percent=0.552239 |gene_alias=ATF|BDPLT5|QPD|UPA|URK|u-PA |gene_description="plasminogen activator, urok...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |BDPLT5= | ||
| + | |QPD= | ||
| + | |UPA= | ||
| + | |URK= | ||
| + | |all_trans=ENST00000496926.1:-135 uc057uep.1:-135 NM_002658:357 NM_001145031:357 NM_001319191:357 ENST00000446342.5:360 uc010qkw.3:360 AK312960:388 AK298560:388 AK297940:388 ENST00000494287.1:403 uc057ueq.1:403 ENST00000372764.3:413 uc001jwa.4:413 BC013575:414 K03226:426 M15476:433 D00244:440 X02760:466 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.03 | |cpg_percent=0.03 | ||
| + | |distance=-135 | ||
|distance_to_tss=-359 | |distance_to_tss=-359 | ||
| + | |end=73910744 | ||
|entrez_id=5328 | |entrez_id=5328 | ||
|gc_percent=0.552239 | |gc_percent=0.552239 | ||
|gene_alias=ATF|BDPLT5|QPD|UPA|URK|u-PA | |gene_alias=ATF|BDPLT5|QPD|UPA|URK|u-PA | ||
|gene_description="plasminogen activator, urokinase" | |gene_description="plasminogen activator, urokinase" | ||
| − | |gene_name=PLAU | + | |gene_id=5328 |
| + | |gene_name="plasminogen activator, urokinase" | ||
| + | |gene_source=HGNC:9052 | ||
| + | |gene_symbol=PLAU | ||
| + | |gene_synonyms=UPA URK | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:9052 | ||
|nearest_ensembl=ENSG00000122861 | |nearest_ensembl=ENSG00000122861 | ||
|nearest_promoter_id=NM_002658 | |nearest_promoter_id=NM_002658 | ||
|nearest_refseq=NM_002658 | |nearest_refseq=NM_002658 | ||
|nearest_unigene=Hs.77274 | |nearest_unigene=Hs.77274 | ||
| + | |num_trans=19 | ||
| + | |species=human | ||
| + | |start=73910739 | ||
| + | |strand=+ | ||
| + | |transcript_name=ENST00000496926.1 uc057uep.1 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_105561.1 | |tss_id=hg_105561.1 | ||
| + | |tss_score=1 | ||
| + | |u-PA= | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 21:40, 8 March 2018
Basic information about the TSS
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|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENST00000496926.1 uc057uep.1 |
|---|---|
| Distance: | -135 |
| Num_trans: | 19 |
| All_trans: | ENST00000496926.1:-135 uc057uep.1:-135 NM_002658:357 NM_001145031:357 NM_001319191:357 ENST00000446342.5:360 uc010qkw.3:360 AK312960:388 AK298560:388 AK297940:388 ENST00000494287.1:403 uc057ueq.1:403 ENST00000372764.3:413 uc001jwa.4:413 BC013575:414 K03226:426 M15476:433 D00244:440 X02760:466 |
TATA-Box annotation
| Distance to TSS: | -359 |
|---|---|
| Nearest PromoterID: | NM_002658 |
| Entrez ID: | 5328 |
| Nearest Unigene: | Hs.77274 |
| Nearest Refseq: | NM_002658 |
| Nearest Ensembl: | ENSG00000122861 |
| Gene Name: | "plasminogen activator, urokinase" |
| Gene Alias: | ATF |
| Gene Description: | "plasminogen activator, urokinase" |
| Gene Type: | protein-coding |
| CpG%: | 0.03 |
| GC%: | 0.552239 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
