Difference between revisions of "TSS:Hg 1056.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.125 |distance_to_tss=49 |entrez_id=51154 |gc_percent=0.726368 |gene_alias=C1orf33|MRT4|dJ657E11.4 |gene_description="MRT4 homolog, ribosome maturati...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |MRT4= | ||
| + | |all_trans=NM_016183:-42 ENST00000330263.4:-84 uc001bbs.4:-84 AK027569:168 AF173378:169 BC003013:170 BC006504:170 AK024227:183 AY303790:188 AK126387:196 ENST00000493700.1:198 uc057cwf.1:198 AK295328:199 KJ898840:199 | ||
| + | |chr=chr1 | ||
|cpg_percent=0.125 | |cpg_percent=0.125 | ||
| + | |dJ657E11.4= | ||
| + | |distance=-42 | ||
|distance_to_tss=49 | |distance_to_tss=49 | ||
| + | |end=19251637 | ||
|entrez_id=51154 | |entrez_id=51154 | ||
|gc_percent=0.726368 | |gc_percent=0.726368 | ||
|gene_alias=C1orf33|MRT4|dJ657E11.4 | |gene_alias=C1orf33|MRT4|dJ657E11.4 | ||
|gene_description="MRT4 homolog, ribosome maturation factor" | |gene_description="MRT4 homolog, ribosome maturation factor" | ||
| − | |gene_name=MRTO4 | + | |gene_id=51154 |
| + | |gene_name="MRT4 homolog, ribosome maturation factor" | ||
| + | |gene_source=HGNC:18477 | ||
| + | |gene_symbol=MRTO4 | ||
| + | |gene_synonyms=MRT4 dJ657E11.4 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:18477 | ||
|nearest_ensembl=ENSG00000053372 | |nearest_ensembl=ENSG00000053372 | ||
|nearest_promoter_id=NM_016183 | |nearest_promoter_id=NM_016183 | ||
|nearest_refseq=NM_016183 | |nearest_refseq=NM_016183 | ||
|nearest_unigene=Hs.463797 | |nearest_unigene=Hs.463797 | ||
| + | |num_trans=14 | ||
| + | |species=human | ||
| + | |start=19251622 | ||
| + | |strand=+ | ||
| + | |transcript_name=NM_016183 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_1056.1 | |tss_id=hg_1056.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=Q9UKD2 | ||
}} | }} | ||
Revision as of 21:42, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | NM_016183 |
|---|---|
| Distance: | -42 |
| Num_trans: | 14 |
| All_trans: | NM_016183:-42 ENST00000330263.4:-84 uc001bbs.4:-84 AK027569:168 AF173378:169 BC003013:170 BC006504:170 AK024227:183 AY303790:188 AK126387:196 ENST00000493700.1:198 uc057cwf.1:198 AK295328:199 KJ898840:199 |
TATA-Box annotation
| Distance to TSS: | 49 |
|---|---|
| Nearest PromoterID: | NM_016183 |
| Entrez ID: | 51154 |
| Nearest Unigene: | Hs.463797 |
| Nearest Refseq: | NM_016183 |
| Nearest Ensembl: | ENSG00000053372 |
| Gene Name: | "MRT4 homolog, ribosome maturation factor" |
| Gene Alias: | C1orf33 |
| Gene Description: | "MRT4 homolog, ribosome maturation factor" |
| Gene Type: | protein-coding |
| CpG%: | 0.125 |
| GC%: | 0.726368 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
