Difference between revisions of "TSS:Hg 10560.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.13 |distance_to_tss=-10 |entrez_id=4237 |gc_percent=0.800995 |gene_alias=MAGP|MAGP-1|MAGP1 |gene_description=microfibrillar associated protein 2 |ge...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |MAGP-1= | ||
| + | |MAGP1= | ||
| + | |all_trans=NM_002403:3 NM_001135248:3 BC015039:3 AK222751:41 ENST00000476788.5:49 uc057ctb.1:49 ENST00000490075.5:60 uc057cta.1:60 BC028033:60 ENST00000375535.3:-139 uc001azw.4:-139 | ||
| + | |chr=chr1 | ||
|cpg_percent=0.13 | |cpg_percent=0.13 | ||
| + | |distance=3 | ||
|distance_to_tss=-10 | |distance_to_tss=-10 | ||
| + | |end=16980696 | ||
|entrez_id=4237 | |entrez_id=4237 | ||
|gc_percent=0.800995 | |gc_percent=0.800995 | ||
|gene_alias=MAGP|MAGP-1|MAGP1 | |gene_alias=MAGP|MAGP-1|MAGP1 | ||
|gene_description=microfibrillar associated protein 2 | |gene_description=microfibrillar associated protein 2 | ||
| − | |gene_name=MFAP2 | + | |gene_id=4237 |
| + | |gene_name=microfibrillar associated protein 2 | ||
| + | |gene_source=HGNC:7033 | ||
| + | |gene_symbol=MFAP2 | ||
| + | |gene_synonyms=MAGP MAGP-1 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:7033 | ||
|nearest_ensembl=ENSG00000117122 | |nearest_ensembl=ENSG00000117122 | ||
|nearest_promoter_id=NM_002403 | |nearest_promoter_id=NM_002403 | ||
|nearest_refseq=NM_002403 | |nearest_refseq=NM_002403 | ||
|nearest_unigene=Hs.389137 | |nearest_unigene=Hs.389137 | ||
| + | |num_trans=11 | ||
| + | |species=human | ||
| + | |start=16980680 | ||
| + | |strand=- | ||
| + | |transcript_name=NM_002403 NM_001135248 BC015039 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_10560.1 | |tss_id=hg_10560.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=P55001 | ||
}} | }} | ||
Revision as of 21:42, 8 March 2018
Basic information about the TSS
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|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | NM_002403 NM_001135248 BC015039 |
|---|---|
| Distance: | 3 |
| Num_trans: | 11 |
| All_trans: | NM_002403:3 NM_001135248:3 BC015039:3 AK222751:41 ENST00000476788.5:49 uc057ctb.1:49 ENST00000490075.5:60 uc057cta.1:60 BC028033:60 ENST00000375535.3:-139 uc001azw.4:-139 |
TATA-Box annotation
| Distance to TSS: | -10 |
|---|---|
| Nearest PromoterID: | NM_002403 |
| Entrez ID: | 4237 |
| Nearest Unigene: | Hs.389137 |
| Nearest Refseq: | NM_002403 |
| Nearest Ensembl: | ENSG00000117122 |
| Gene Name: | microfibrillar associated protein 2 |
| Gene Alias: | MAGP |
| Gene Description: | microfibrillar associated protein 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.13 |
| GC%: | 0.800995 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
