Difference between revisions of "TSS:Hg 105613.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.145 |distance_to_tss=20 |entrez_id=142891 |gc_percent=0.791045 |gene_alias=HEL-177|SMSr |gene_description=sterile alpha motif domain containing 8 |g...") |
|||
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| + | |SMSr= | ||
| + | |all_trans=ENST00000542569.5:-7 NM_144660:-7 NM_001174156:-7 uc001jwx.2:-7 BC080593:-7 ENST00000372687.4:41 uc001jwy.3:41 AK057811:41 EU668332:41 GQ472208:41 ENST00000372690.7:-171 uc057ufy.1:-171 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.145 | |cpg_percent=0.145 | ||
| + | |distance=-7 | ||
|distance_to_tss=20 | |distance_to_tss=20 | ||
| + | |end=75111668 | ||
|entrez_id=142891 | |entrez_id=142891 | ||
|gc_percent=0.791045 | |gc_percent=0.791045 | ||
|gene_alias=HEL-177|SMSr | |gene_alias=HEL-177|SMSr | ||
|gene_description=sterile alpha motif domain containing 8 | |gene_description=sterile alpha motif domain containing 8 | ||
| − | |gene_name=SAMD8 | + | |gene_id=142891 |
| + | |gene_name=sterile alpha motif domain containing 8 | ||
| + | |gene_source=HGNC:26320 | ||
| + | |gene_symbol=SAMD8 | ||
| + | |gene_synonyms=FLJ25082 SMSr | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:26320 | ||
|nearest_ensembl=ENSG00000156671 | |nearest_ensembl=ENSG00000156671 | ||
|nearest_promoter_id=NM_144660 | |nearest_promoter_id=NM_144660 | ||
|nearest_refseq=NM_144660 | |nearest_refseq=NM_144660 | ||
|nearest_unigene=Hs.744986 | |nearest_unigene=Hs.744986 | ||
| + | |num_trans=12 | ||
| + | |species=human | ||
| + | |start=75111641 | ||
| + | |strand=+ | ||
| + | |transcript_name=ENST00000542569.5 NM_144660 NM_001174156 uc001jwx.2 BC080593 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_105613.1 | |tss_id=hg_105613.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=Q96LT4 V9HVY4 | ||
}} | }} | ||
Revision as of 21:43, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000542569.5 NM_144660 NM_001174156 uc001jwx.2 BC080593 |
|---|---|
| Distance: | -7 |
| Num_trans: | 12 |
| All_trans: | ENST00000542569.5:-7 NM_144660:-7 NM_001174156:-7 uc001jwx.2:-7 BC080593:-7 ENST00000372687.4:41 uc001jwy.3:41 AK057811:41 EU668332:41 GQ472208:41 ENST00000372690.7:-171 uc057ufy.1:-171 |
TATA-Box annotation
| Distance to TSS: | 20 |
|---|---|
| Nearest PromoterID: | NM_144660 |
| Entrez ID: | 142891 |
| Nearest Unigene: | Hs.744986 |
| Nearest Refseq: | NM_144660 |
| Nearest Ensembl: | ENSG00000156671 |
| Gene Name: | sterile alpha motif domain containing 8 |
| Gene Alias: | HEL-177 |
| Gene Description: | sterile alpha motif domain containing 8 |
| Gene Type: | protein-coding |
| CpG%: | 0.145 |
| GC%: | 0.791045 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
