Difference between revisions of "TSS:Hg 105620.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.085 |distance_to_tss=472 |entrez_id=7417 |gc_percent=0.721393 |gene_alias=POR |gene_description=voltage dependent anion channel 2 |gene_name=VDAC2 |...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=ENST00000344036.8:15 uc057ugb.1:15 NM_003375:-80 NM_001184783:-80 NR_033675:-80 ENST00000332211.10:121 uc001jwz.5:121 ENST00000472137.5:145 uc057ugc.1:145 ENST00000470745.5:174 uc057ugd.1:174 BC000165:175 ENST00000475142.5:183 uc057uge.1:183 ENST00000481876.5:184 uc057ugf.1:184 BC072407:185 AK315919:199 AK296635:205 BC012883:217 ENST00000313132.8:218 uc001jxa.5:218 L08666:218 ENST00000498394.5:226 uc057ugg.1:226 ENST00000468285.1:234 uc057ugh.1:234 ENST00000447677.5:404 uc057ugi.1:404 ENST00000298468.9:-468 ENST00000543351.5:-468 NM_001184823:-468 uc057uga.1:-468 uc021ptp.3:-468 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.085 | |cpg_percent=0.085 | ||
| + | |distance=15 | ||
|distance_to_tss=472 | |distance_to_tss=472 | ||
| + | |end=75210630 | ||
|entrez_id=7417 | |entrez_id=7417 | ||
|gc_percent=0.721393 | |gc_percent=0.721393 | ||
|gene_alias=POR | |gene_alias=POR | ||
|gene_description=voltage dependent anion channel 2 | |gene_description=voltage dependent anion channel 2 | ||
| − | |gene_name=VDAC2 | + | |gene_id=7417 |
| + | |gene_name=voltage dependent anion channel 2 | ||
| + | |gene_source=HGNC:12672 | ||
| + | |gene_symbol=VDAC2 | ||
| + | |gene_synonyms= | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:12672 | ||
|nearest_ensembl=ENSG00000165637 | |nearest_ensembl=ENSG00000165637 | ||
|nearest_promoter_id=NM_001324087 | |nearest_promoter_id=NM_001324087 | ||
|nearest_refseq=NM_003375 | |nearest_refseq=NM_003375 | ||
|nearest_unigene=Hs.355927 | |nearest_unigene=Hs.355927 | ||
| + | |num_trans=34 | ||
| + | |species=human | ||
| + | |start=75210621 | ||
| + | |strand=+ | ||
| + | |transcript_name=ENST00000344036.8 uc057ugb.1 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_105620.1 | |tss_id=hg_105620.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=Q5JSD2 | ||
}} | }} | ||
Revision as of 21:43, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000344036.8 uc057ugb.1 |
|---|---|
| Distance: | 15 |
| Num_trans: | 34 |
| All_trans: | ENST00000344036.8:15 uc057ugb.1:15 NM_003375:-80 NM_001184783:-80 NR_033675:-80 ENST00000332211.10:121 uc001jwz.5:121 ENST00000472137.5:145 uc057ugc.1:145 ENST00000470745.5:174 uc057ugd.1:174 BC000165:175 ENST00000475142.5:183 uc057uge.1:183 ENST00000481876.5:184 uc057ugf.1:184 BC072407:185 AK315919:199 AK296635:205 BC012883:217 ENST00000313132.8:218 uc001jxa.5:218 L08666:218 ENST00000498394.5:226 uc057ugg.1:226 ENST00000468285.1:234 uc057ugh.1:234 ENST00000447677.5:404 uc057ugi.1:404 ENST00000298468.9:-468 ENST00000543351.5:-468 NM_001184823:-468 uc057uga.1:-468 uc021ptp.3:-468 |
TATA-Box annotation
| Distance to TSS: | 472 |
|---|---|
| Nearest PromoterID: | NM_001324087 |
| Entrez ID: | 7417 |
| Nearest Unigene: | Hs.355927 |
| Nearest Refseq: | NM_003375 |
| Nearest Ensembl: | ENSG00000165637 |
| Gene Name: | voltage dependent anion channel 2 |
| Gene Alias: | POR |
| Gene Description: | voltage dependent anion channel 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.085 |
| GC%: | 0.721393 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
