Difference between revisions of "TSS:Hg 105622.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.11 |distance_to_tss=867 |entrez_id=7417 |gc_percent=0.736318 |gene_alias=POR |gene_description=voltage dependent anion channel 2 |gene_name=VDAC2 |g...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=ENST00000447677.5:0 uc057ugi.1:0 L06328:108 CU687220:121 KJ892371:121 ENST00000468285.1:-141 uc057ugh.1:-141 ENST00000498394.5:-149 uc057ugg.1:-149 ENST00000313132.8:-157 uc001jxa.5:-157 L08666:-157 BC012883:-158 AK296635:-170 AK315919:-176 BC072407:-190 ENST00000481876.5:-191 uc057ugf.1:-191 ENST00000475142.5:-192 uc057uge.1:-192 BC000165:-200 ENST00000470745.5:-201 uc057ugd.1:-201 ENST00000472137.5:-230 uc057ugc.1:-230 ENST00000332211.10:-254 uc001jwz.5:-254 ENST00000344036.8:-360 uc057ugb.1:-360 ENST00000413289.1:419 uc057ugj.1:419 NM_003375:-463 NM_001184783:-463 NR_033675:-463 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.11 | |cpg_percent=0.11 | ||
| + | |distance=0 | ||
|distance_to_tss=867 | |distance_to_tss=867 | ||
| + | |end=75211037 | ||
|entrez_id=7417 | |entrez_id=7417 | ||
|gc_percent=0.736318 | |gc_percent=0.736318 | ||
|gene_alias=POR | |gene_alias=POR | ||
|gene_description=voltage dependent anion channel 2 | |gene_description=voltage dependent anion channel 2 | ||
| − | |gene_name=VDAC2 | + | |gene_id=7417 |
| + | |gene_name=voltage dependent anion channel 2 | ||
| + | |gene_source=HGNC:12672 | ||
| + | |gene_symbol=VDAC2 | ||
| + | |gene_synonyms= | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:12672 | ||
|nearest_ensembl=ENSG00000165637 | |nearest_ensembl=ENSG00000165637 | ||
|nearest_promoter_id=NM_001324087 | |nearest_promoter_id=NM_001324087 | ||
|nearest_refseq=NM_003375 | |nearest_refseq=NM_003375 | ||
|nearest_unigene=Hs.355927 | |nearest_unigene=Hs.355927 | ||
| + | |num_trans=34 | ||
| + | |species=human | ||
| + | |start=75211004 | ||
| + | |strand=+ | ||
| + | |transcript_name=ENST00000447677.5 uc057ugi.1 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_105622.1 | |tss_id=hg_105622.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=Q5JSD1 | ||
}} | }} | ||
Revision as of 21:43, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000447677.5 uc057ugi.1 |
|---|---|
| Distance: | 0 |
| Num_trans: | 34 |
| All_trans: | ENST00000447677.5:0 uc057ugi.1:0 L06328:108 CU687220:121 KJ892371:121 ENST00000468285.1:-141 uc057ugh.1:-141 ENST00000498394.5:-149 uc057ugg.1:-149 ENST00000313132.8:-157 uc001jxa.5:-157 L08666:-157 BC012883:-158 AK296635:-170 AK315919:-176 BC072407:-190 ENST00000481876.5:-191 uc057ugf.1:-191 ENST00000475142.5:-192 uc057uge.1:-192 BC000165:-200 ENST00000470745.5:-201 uc057ugd.1:-201 ENST00000472137.5:-230 uc057ugc.1:-230 ENST00000332211.10:-254 uc001jwz.5:-254 ENST00000344036.8:-360 uc057ugb.1:-360 ENST00000413289.1:419 uc057ugj.1:419 NM_003375:-463 NM_001184783:-463 NR_033675:-463 |
TATA-Box annotation
| Distance to TSS: | 867 |
|---|---|
| Nearest PromoterID: | NM_001324087 |
| Entrez ID: | 7417 |
| Nearest Unigene: | Hs.355927 |
| Nearest Refseq: | NM_003375 |
| Nearest Ensembl: | ENSG00000165637 |
| Gene Name: | voltage dependent anion channel 2 |
| Gene Alias: | POR |
| Gene Description: | voltage dependent anion channel 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.11 |
| GC%: | 0.736318 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
