Difference between revisions of "TSS:Hg 10572.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.115 |distance_to_tss=28 |entrez_id=6390 |gc_percent=0.671642 |gene_alias=CWS2|IP|PGL4|SDH|SDH1|SDH2|SDHIP |gene_description=succinate dehydrogenase...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |IP= | ||
| + | |PGL4= | ||
| + | |SDH= | ||
| + | |SDH1= | ||
| + | |SDH2= | ||
| + | |SDHIP= | ||
| + | |all_trans=U17248:-2 ENST00000375499.7:-21 NM_003000:-21 uc001bae.5:-21 BC007840:-21 AK312056:104 ENST00000466613.2:105 uc057ctw.1:105 KJ897534:117 KR710093:117 KR710094:117 KR710095:117 KR710096:117 KJ897533:117 ENST00000485515.5:129 uc057cts.1:129 DQ403007:144 | ||
| + | |chr=chr1 | ||
|cpg_percent=0.115 | |cpg_percent=0.115 | ||
| + | |distance=-2 | ||
|distance_to_tss=28 | |distance_to_tss=28 | ||
| + | |end=17054149 | ||
|entrez_id=6390 | |entrez_id=6390 | ||
|gc_percent=0.671642 | |gc_percent=0.671642 | ||
|gene_alias=CWS2|IP|PGL4|SDH|SDH1|SDH2|SDHIP | |gene_alias=CWS2|IP|PGL4|SDH|SDH1|SDH2|SDHIP | ||
|gene_description=succinate dehydrogenase complex iron sulfur subunit B | |gene_description=succinate dehydrogenase complex iron sulfur subunit B | ||
| − | |gene_name=SDHB | + | |gene_id=6390 |
| + | |gene_name=succinate dehydrogenase complex iron sulfur subunit B | ||
| + | |gene_source=HGNC:10681 | ||
| + | |gene_symbol=SDHB | ||
| + | |gene_synonyms= | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:10681 | ||
|nearest_ensembl=ENSG00000117118 | |nearest_ensembl=ENSG00000117118 | ||
|nearest_promoter_id=NM_003000 | |nearest_promoter_id=NM_003000 | ||
|nearest_refseq=NM_003000 | |nearest_refseq=NM_003000 | ||
|nearest_unigene=Hs.465924 | |nearest_unigene=Hs.465924 | ||
| + | |num_trans=17 | ||
| + | |species=human | ||
| + | |start=17054135 | ||
| + | |strand=- | ||
| + | |transcript_name=U17248 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_10572.1 | |tss_id=hg_10572.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 21:47, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | U17248 |
|---|---|
| Distance: | -2 |
| Num_trans: | 17 |
| All_trans: | U17248:-2 ENST00000375499.7:-21 NM_003000:-21 uc001bae.5:-21 BC007840:-21 AK312056:104 ENST00000466613.2:105 uc057ctw.1:105 KJ897534:117 KR710093:117 KR710094:117 KR710095:117 KR710096:117 KJ897533:117 ENST00000485515.5:129 uc057cts.1:129 DQ403007:144 |
TATA-Box annotation
| Distance to TSS: | 28 |
|---|---|
| Nearest PromoterID: | NM_003000 |
| Entrez ID: | 6390 |
| Nearest Unigene: | Hs.465924 |
| Nearest Refseq: | NM_003000 |
| Nearest Ensembl: | ENSG00000117118 |
| Gene Name: | succinate dehydrogenase complex iron sulfur subunit B |
| Gene Alias: | CWS2 |
| Gene Description: | succinate dehydrogenase complex iron sulfur subunit B |
| Gene Type: | protein-coding |
| CpG%: | 0.115 |
| GC%: | 0.671642 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
