Difference between revisions of "TSS:Hg 105813.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.01 |distance_to_tss=0 |entrez_id=653509 |gc_percent=0.577114 |gene_alias=COLEC4|PSAP|PSP-A|PSPA|SFTP1|SFTPA1B|SP-A|SP-A1|SPA|SPA1 |gene_description=...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |PSAP= | ||
| + | |PSP-A= | ||
| + | |PSPA= | ||
| + | |SFTP1= | ||
| + | |SFTPA1B= | ||
| + | |SP-A= | ||
| + | |SP-A1= | ||
| + | |SPA= | ||
| + | |SPA1= | ||
| + | |all_trans=ENST00000398636.7:0 ENST00000428376.6:0 NM_005411:0 NM_001164646:0 NM_001093770:0 NM_001164645:0 NM_001164644:0 NM_001164647:0 uc001kap.4:0 uc001kar.4:0 AK290703:0 AK298002:0 AK298034:0 AK298029:0 AK316196:0 HQ021433:0 HQ021434:0 HQ021435:0 HQ021436:0 HQ021437:0 HQ021438:0 HQ021439:0 HQ021440:0 HQ021441:0 HQ021442:0 JX502764:0 JX502765:0 AK298092:0 S69687:0 S69688:0 S69690:0 AK309518:0 ENST00000419470.6:1 uc009xry.4:1 BC026229:1 M13686:7 ENST00000429958.5:9 uc057ulj.1:9 ENST00000439264.1:11 uc057ulk.1:11 BC111570:16 ENST00000486922.1:17 uc057ull.1:17 BC029913:375 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.01 | |cpg_percent=0.01 | ||
| + | |distance=0 | ||
|distance_to_tss=0 | |distance_to_tss=0 | ||
| + | |end=79610944 | ||
|entrez_id=653509 | |entrez_id=653509 | ||
|gc_percent=0.577114 | |gc_percent=0.577114 | ||
|gene_alias=COLEC4|PSAP|PSP-A|PSPA|SFTP1|SFTPA1B|SP-A|SP-A1|SPA|SPA1 | |gene_alias=COLEC4|PSAP|PSP-A|PSPA|SFTP1|SFTPA1B|SP-A|SP-A1|SPA|SPA1 | ||
|gene_description=surfactant protein A1 | |gene_description=surfactant protein A1 | ||
| − | |gene_name=SFTPA1 | + | |gene_id=653509 |
| + | |gene_name=surfactant protein A1 | ||
| + | |gene_source=HGNC:10798 | ||
| + | |gene_symbol=SFTPA1 | ||
| + | |gene_synonyms=COLEC4 SP-A SP-A1 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:10798 | ||
|nearest_ensembl=ENSG00000122852 | |nearest_ensembl=ENSG00000122852 | ||
|nearest_promoter_id=NM_001164647 | |nearest_promoter_id=NM_001164647 | ||
|nearest_refseq=NM_005411 | |nearest_refseq=NM_005411 | ||
|nearest_unigene=Hs.535295 | |nearest_unigene=Hs.535295 | ||
| + | |num_trans=44 | ||
| + | |species=human | ||
| + | |start=79610933 | ||
| + | |strand=+ | ||
|tata_box="-31(ATCTATAAATGC,-,0.00)" | |tata_box="-31(ATCTATAAATGC,-,0.00)" | ||
| + | |transcript_name=ENST00000398636.7 ENST00000428376.6 NM_005411 NM_001164646 NM_001093770 NM_001164645 NM_001164644 NM_001164647 uc001kap.4 uc001kar.4 AK290703 AK298002 AK298034 AK298029 AK316196 HQ021433 HQ021434 HQ021435 HQ021436 HQ021437 HQ021438 HQ021439 HQ021440 HQ021441 HQ021442 JX502764 JX502765 AK298092 S69687 S69688 S69690 AK309518 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_105813.1 | |tss_id=hg_105813.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=A0A024QZP2 B4DNP6 B4DNR9 B4DNS3 B4DNW5 Q8IWL2 | ||
}} | }} | ||
Revision as of 21:51, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000398636.7 ENST00000428376.6 NM_005411 NM_001164646 NM_001093770 NM_001164645 NM_001164644 NM_001164647 uc001kap.4 uc001kar.4 AK290703 AK298002 AK298034 AK298029 AK316196 HQ021433 HQ021434 HQ021435 HQ021436 HQ021437 HQ021438 HQ021439 HQ021440 HQ021441 HQ021442 JX502764 JX502765 AK298092 S69687 S69688 S69690 AK309518 |
|---|---|
| Distance: | 0 |
| Num_trans: | 44 |
| All_trans: | ENST00000398636.7:0 ENST00000428376.6:0 NM_005411:0 NM_001164646:0 NM_001093770:0 NM_001164645:0 NM_001164644:0 NM_001164647:0 uc001kap.4:0 uc001kar.4:0 AK290703:0 AK298002:0 AK298034:0 AK298029:0 AK316196:0 HQ021433:0 HQ021434:0 HQ021435:0 HQ021436:0 HQ021437:0 HQ021438:0 HQ021439:0 HQ021440:0 HQ021441:0 HQ021442:0 JX502764:0 JX502765:0 AK298092:0 S69687:0 S69688:0 S69690:0 AK309518:0 ENST00000419470.6:1 uc009xry.4:1 BC026229:1 M13686:7 ENST00000429958.5:9 uc057ulj.1:9 ENST00000439264.1:11 uc057ulk.1:11 BC111570:16 ENST00000486922.1:17 uc057ull.1:17 BC029913:375 |
TATA-Box annotation
| Distance to TSS: | 0 |
|---|---|
| Nearest PromoterID: | NM_001164647 |
| Entrez ID: | 653509 |
| Nearest Unigene: | Hs.535295 |
| Nearest Refseq: | NM_005411 |
| Nearest Ensembl: | ENSG00000122852 |
| Gene Name: | surfactant protein A1 |
| Gene Alias: | COLEC4 |
| Gene Description: | surfactant protein A1 |
| Gene Type: | protein-coding |
| CpG%: | 0.01 |
| GC%: | 0.577114 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-31(ATCTATAAATGC,-,0.00)" |
