Difference between revisions of "TSS:Hg 105839.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.105 |distance_to_tss=1 |entrez_id=100288974 |gc_percent=0.631841 |gene_alias=- |gene_description="BMS1, ribosome biogenesis factor pseudogene 21" |g...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=ENST00000453174.6:0 NR_033857:0 BC071736:0 AK307851:0 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.105 | |cpg_percent=0.105 | ||
| + | |distance=0 | ||
|distance_to_tss=1 | |distance_to_tss=1 | ||
| + | |end=79904919 | ||
|entrez_id=100288974 | |entrez_id=100288974 | ||
|gc_percent=0.631841 | |gc_percent=0.631841 | ||
|gene_alias=- | |gene_alias=- | ||
|gene_description="BMS1, ribosome biogenesis factor pseudogene 21" | |gene_description="BMS1, ribosome biogenesis factor pseudogene 21" | ||
| − | |gene_name=BMS1P21 | + | |gene_id=100288974 |
| + | |gene_name="BMS1, ribosome biogenesis factor pseudogene 21; mannose-binding lectin (protein A) 1, pseudogene" | ||
| + | |gene_source=HGNC:51604 HGNC:6921 | ||
| + | |gene_symbol=BMS1P21 MBL1P | ||
| + | |gene_synonyms=COLEC3P | ||
|gene_type=pseudo | |gene_type=pseudo | ||
| + | |hgnc_mgi_id=HGNC:51604 HGNC:6921 | ||
|nearest_ensembl=ENSG00000242600 | |nearest_ensembl=ENSG00000242600 | ||
|nearest_promoter_id=NR_033857 | |nearest_promoter_id=NR_033857 | ||
|nearest_refseq=NR_033857 | |nearest_refseq=NR_033857 | ||
|nearest_unigene=Hs.733579 | |nearest_unigene=Hs.733579 | ||
| + | |num_trans=4 | ||
| + | |species=human | ||
| + | |start=79904879 | ||
| + | |strand=+ | ||
| + | |transcript_name=ENST00000453174.6 NR_033857 BC071736 AK307851 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_105839.1 | |tss_id=hg_105839.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 21:52, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000453174.6 NR_033857 BC071736 AK307851 |
|---|---|
| Distance: | 0 |
| Num_trans: | 4 |
| All_trans: | ENST00000453174.6:0 NR_033857:0 BC071736:0 AK307851:0 |
TATA-Box annotation
| Distance to TSS: | 1 |
|---|---|
| Nearest PromoterID: | NR_033857 |
| Entrez ID: | 100288974 |
| Nearest Unigene: | Hs.733579 |
| Nearest Refseq: | NR_033857 |
| Nearest Ensembl: | ENSG00000242600 |
| Gene Name: | "BMS1, ribosome biogenesis factor pseudogene 21; mannose-binding lectin (protein A) 1, pseudogene" |
| Gene Alias: | - |
| Gene Description: | "BMS1, ribosome biogenesis factor pseudogene 21" |
| Gene Type: | pseudo |
| CpG%: | 0.105 |
| GC%: | 0.631841 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
