Difference between revisions of "TSS:Hg 105852.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.07 |distance_to_tss=-2 |entrez_id=439990 |gc_percent=0.606965 |gene_alias=- |gene_description=long intergenic non-protein coding RNA 857 |gene_name=...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=ENST00000422847.1:0 NR_038464:0 uc001kbv.3:0 BC048265:0 BC009626:370 ENST00000432308.1:494 uc057unc.1:494 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.07 | |cpg_percent=0.07 | ||
| + | |distance=0 | ||
|distance_to_tss=-2 | |distance_to_tss=-2 | ||
| + | |end=80207715 | ||
|entrez_id=439990 | |entrez_id=439990 | ||
|gc_percent=0.606965 | |gc_percent=0.606965 | ||
|gene_alias=- | |gene_alias=- | ||
|gene_description=long intergenic non-protein coding RNA 857 | |gene_description=long intergenic non-protein coding RNA 857 | ||
| − | |gene_name=LINC00857 | + | |gene_id=439990 |
| + | |gene_name=long intergenic non-protein coding RNA 857 | ||
| + | |gene_source=HGNC:45114 | ||
| + | |gene_symbol=LINC00857 | ||
| + | |gene_synonyms= | ||
|gene_type=ncRNA | |gene_type=ncRNA | ||
| + | |hgnc_mgi_id=HGNC:45114 | ||
|nearest_ensembl=ENSG00000237523 | |nearest_ensembl=ENSG00000237523 | ||
|nearest_promoter_id=NR_038464 | |nearest_promoter_id=NR_038464 | ||
|nearest_refseq=NR_038464 | |nearest_refseq=NR_038464 | ||
|nearest_unigene=Hs.365566 | |nearest_unigene=Hs.365566 | ||
| + | |num_trans=7 | ||
| + | |species=human | ||
| + | |start=80207700 | ||
| + | |strand=+ | ||
| + | |transcript_name=ENST00000422847.1 NR_038464 uc001kbv.3 BC048265 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_105852.1 | |tss_id=hg_105852.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 21:53, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENST00000422847.1 NR_038464 uc001kbv.3 BC048265 |
|---|---|
| Distance: | 0 |
| Num_trans: | 7 |
| All_trans: | ENST00000422847.1:0 NR_038464:0 uc001kbv.3:0 BC048265:0 BC009626:370 ENST00000432308.1:494 uc057unc.1:494 |
TATA-Box annotation
| Distance to TSS: | -2 |
|---|---|
| Nearest PromoterID: | NR_038464 |
| Entrez ID: | 439990 |
| Nearest Unigene: | Hs.365566 |
| Nearest Refseq: | NR_038464 |
| Nearest Ensembl: | ENSG00000237523 |
| Gene Name: | long intergenic non-protein coding RNA 857 |
| Gene Alias: | - |
| Gene Description: | long intergenic non-protein coding RNA 857 |
| Gene Type: | ncRNA |
| CpG%: | 0.07 |
| GC%: | 0.606965 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
