Difference between revisions of "TSS:Hg 105859.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.12 |distance_to_tss=155 |entrez_id=84293 |gc_percent=0.741294 |gene_alias=C10orf58|PAMM |gene_description=family with sequence similarity 213 member...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |PAMM= | ||
| + | |all_trans=AY359059:-43 AK315440:-44 AK074643:-94 ENST00000372185.5:-142 uc001kcd.5:-142 AK075447:-142 ENST00000606162.5:-143 uc001kcc.5:-143 ENST00000615554.4:-150 NM_001243781:-150 NM_032333:-150 NM_001243780:-150 uc001kcf.5:-150 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.12 | |cpg_percent=0.12 | ||
| + | |distance=-43 | ||
|distance_to_tss=155 | |distance_to_tss=155 | ||
| + | |end=80408647 | ||
|entrez_id=84293 | |entrez_id=84293 | ||
|gc_percent=0.741294 | |gc_percent=0.741294 | ||
|gene_alias=C10orf58|PAMM | |gene_alias=C10orf58|PAMM | ||
|gene_description=family with sequence similarity 213 member A | |gene_description=family with sequence similarity 213 member A | ||
| − | |gene_name=FAM213A | + | |gene_id=84293 |
| + | |gene_name=family with sequence similarity 213 member A | ||
| + | |gene_source=HGNC:28651 | ||
| + | |gene_symbol=FAM213A | ||
| + | |gene_synonyms=MGC4248 PAMM | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:28651 | ||
|nearest_ensembl=ENSG00000122378 | |nearest_ensembl=ENSG00000122378 | ||
|nearest_promoter_id=NM_001243780 | |nearest_promoter_id=NM_001243780 | ||
|nearest_refseq=NM_032333 | |nearest_refseq=NM_032333 | ||
|nearest_unigene=Hs.500333 | |nearest_unigene=Hs.500333 | ||
| + | |num_trans=13 | ||
| + | |species=human | ||
| + | |start=80408635 | ||
| + | |strand=+ | ||
| + | |transcript_name=AY359059 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_105859.1 | |tss_id=hg_105859.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id= | ||
}} | }} | ||
Revision as of 21:53, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | AY359059 |
|---|---|
| Distance: | -43 |
| Num_trans: | 13 |
| All_trans: | AY359059:-43 AK315440:-44 AK074643:-94 ENST00000372185.5:-142 uc001kcd.5:-142 AK075447:-142 ENST00000606162.5:-143 uc001kcc.5:-143 ENST00000615554.4:-150 NM_001243781:-150 NM_032333:-150 NM_001243780:-150 uc001kcf.5:-150 |
TATA-Box annotation
| Distance to TSS: | 155 |
|---|---|
| Nearest PromoterID: | NM_001243780 |
| Entrez ID: | 84293 |
| Nearest Unigene: | Hs.500333 |
| Nearest Refseq: | NM_032333 |
| Nearest Ensembl: | ENSG00000122378 |
| Gene Name: | family with sequence similarity 213 member A |
| Gene Alias: | C10orf58 |
| Gene Description: | family with sequence similarity 213 member A |
| Gene Type: | protein-coding |
| CpG%: | 0.12 |
| GC%: | 0.741294 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
