Difference between revisions of "TSS:Hg 105935.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.135 |distance_to_tss=17 |entrez_id=92211 |gc_percent=0.771144 |gene_alias=CORD15|PCDH21|PRCAD|RP65 |gene_description=cadherin related family member...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |PCDH21= | ||
| + | |PRCAD= | ||
| + | |RP65= | ||
| + | |all_trans=ENST00000623527.3:0 ENST00000332904.7:0 NM_033100:0 NM_001171971:0 uc001kcv.4:0 uc001kcw.5:0 AB593154:0 AB593155:0 BC038799:0 AB463200:78 AB053448:80 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.135 | |cpg_percent=0.135 | ||
| + | |distance=0 | ||
|distance_to_tss=17 | |distance_to_tss=17 | ||
| + | |end=84194682 | ||
|entrez_id=92211 | |entrez_id=92211 | ||
|gc_percent=0.771144 | |gc_percent=0.771144 | ||
|gene_alias=CORD15|PCDH21|PRCAD|RP65 | |gene_alias=CORD15|PCDH21|PRCAD|RP65 | ||
|gene_description=cadherin related family member 1 | |gene_description=cadherin related family member 1 | ||
| − | |gene_name=CDHR1 | + | |gene_id=92211 |
| + | |gene_name=cadherin related family member 1 | ||
| + | |gene_source=HGNC:14550 | ||
| + | |gene_symbol=CDHR1 | ||
| + | |gene_synonyms=CORD15 KIAA1775 RP65 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:14550 | ||
|nearest_ensembl=ENSG00000148600 | |nearest_ensembl=ENSG00000148600 | ||
|nearest_promoter_id=NM_033100 | |nearest_promoter_id=NM_033100 | ||
|nearest_refseq=NM_033100 | |nearest_refseq=NM_033100 | ||
|nearest_unigene=Hs.137556 | |nearest_unigene=Hs.137556 | ||
| + | |num_trans=11 | ||
| + | |species=human | ||
| + | |start=84194621 | ||
| + | |strand=+ | ||
| + | |transcript_name=ENST00000623527.3 ENST00000332904.7 NM_033100 NM_001171971 uc001kcv.4 uc001kcw.5 AB593154 AB593155 BC038799 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_105935.1 | |tss_id=hg_105935.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=F1T0L2 Q96JP9 | ||
}} | }} | ||
Revision as of 21:57, 8 March 2018
Basic information about the TSS
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| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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Transcript annotation
| Transcript_name: | ENST00000623527.3 ENST00000332904.7 NM_033100 NM_001171971 uc001kcv.4 uc001kcw.5 AB593154 AB593155 BC038799 |
|---|---|
| Distance: | 0 |
| Num_trans: | 11 |
| All_trans: | ENST00000623527.3:0 ENST00000332904.7:0 NM_033100:0 NM_001171971:0 uc001kcv.4:0 uc001kcw.5:0 AB593154:0 AB593155:0 BC038799:0 AB463200:78 AB053448:80 |
TATA-Box annotation
| Distance to TSS: | 17 |
|---|---|
| Nearest PromoterID: | NM_033100 |
| Entrez ID: | 92211 |
| Nearest Unigene: | Hs.137556 |
| Nearest Refseq: | NM_033100 |
| Nearest Ensembl: | ENSG00000148600 |
| Gene Name: | cadherin related family member 1 |
| Gene Alias: | CORD15 |
| Gene Description: | cadherin related family member 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.135 |
| GC%: | 0.771144 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
