Difference between revisions of "TSS:Hg 105942.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.015 |distance_to_tss=0 |entrez_id=5995 |gc_percent=0.606965 |gene_alias=RP44 |gene_description=retinal G protein coupled receptor |gene_name=RGR |ge...") |
|||
| Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=ENST00000469446.5:0 ENST00000478727.5:0 ENST00000358110.6:0 ENST00000359452.8:0 NM_002921:0 NM_001012722:0 NM_001012720:0 uc057uou.1:0 uc057uov.1:0 uc001kde.1:0 uc001kdd.2:0 BX641033:0 U14910:0 ENST00000483660.5:4 uc057uow.1:4 BC011349:20 ENST00000372092.3:27 uc001kdb.2:27 BC008094:27 BC042536:28 ENST00000483771.5:30 uc057uox.1:30 BC027987:30 CU675929:32 DQ892074:32 DQ895267:32 KJ897466:32 KR709673:32 KR709674:32 KR709675:32 KJ905896:32 KU178307:32 KU178308:32 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.015 | |cpg_percent=0.015 | ||
| + | |distance=0 | ||
|distance_to_tss=0 | |distance_to_tss=0 | ||
| + | |end=84245059 | ||
|entrez_id=5995 | |entrez_id=5995 | ||
|gc_percent=0.606965 | |gc_percent=0.606965 | ||
|gene_alias=RP44 | |gene_alias=RP44 | ||
|gene_description=retinal G protein coupled receptor | |gene_description=retinal G protein coupled receptor | ||
| − | |gene_name=RGR | + | |gene_id=5995 |
| + | |gene_name=retinal G protein coupled receptor | ||
| + | |gene_source=HGNC:9990 | ||
| + | |gene_symbol=RGR | ||
| + | |gene_synonyms=RP44 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:9990 | ||
|nearest_ensembl=ENSG00000148604 | |nearest_ensembl=ENSG00000148604 | ||
|nearest_promoter_id=NM_001012722 | |nearest_promoter_id=NM_001012722 | ||
|nearest_refseq=NM_002921 | |nearest_refseq=NM_002921 | ||
|nearest_unigene=Hs.1544 | |nearest_unigene=Hs.1544 | ||
| + | |num_trans=33 | ||
| + | |species=human | ||
| + | |start=84245046 | ||
| + | |strand=+ | ||
|tata_box="-35(GCCCTTTAAAAG,-,0.00),-34(CCCTTTAAAAGG,+,0.00),-34(CCCTTTAAAAGG,-,0.00),-33(CCTTTAAAAGGG,+,0.00)" | |tata_box="-35(GCCCTTTAAAAG,-,0.00),-34(CCCTTTAAAAGG,+,0.00),-34(CCCTTTAAAAGG,-,0.00),-33(CCTTTAAAAGGG,+,0.00)" | ||
| + | |transcript_name=ENST00000469446.5 ENST00000478727.5 ENST00000358110.6 ENST00000359452.8 NM_002921 NM_001012722 NM_001012720 uc057uou.1 uc057uov.1 uc001kde.1 uc001kdd.2 BX641033 U14910 | ||
| + | |tss_classification=no | ||
|tss_id=hg_105942.1 | |tss_id=hg_105942.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=P47804 | ||
}} | }} | ||
Revision as of 21:57, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000469446.5 ENST00000478727.5 ENST00000358110.6 ENST00000359452.8 NM_002921 NM_001012722 NM_001012720 uc057uou.1 uc057uov.1 uc001kde.1 uc001kdd.2 BX641033 U14910 |
|---|---|
| Distance: | 0 |
| Num_trans: | 33 |
| All_trans: | ENST00000469446.5:0 ENST00000478727.5:0 ENST00000358110.6:0 ENST00000359452.8:0 NM_002921:0 NM_001012722:0 NM_001012720:0 uc057uou.1:0 uc057uov.1:0 uc001kde.1:0 uc001kdd.2:0 BX641033:0 U14910:0 ENST00000483660.5:4 uc057uow.1:4 BC011349:20 ENST00000372092.3:27 uc001kdb.2:27 BC008094:27 BC042536:28 ENST00000483771.5:30 uc057uox.1:30 BC027987:30 CU675929:32 DQ892074:32 DQ895267:32 KJ897466:32 KR709673:32 KR709674:32 KR709675:32 KJ905896:32 KU178307:32 KU178308:32 |
TATA-Box annotation
| Distance to TSS: | 0 |
|---|---|
| Nearest PromoterID: | NM_001012722 |
| Entrez ID: | 5995 |
| Nearest Unigene: | Hs.1544 |
| Nearest Refseq: | NM_002921 |
| Nearest Ensembl: | ENSG00000148604 |
| Gene Name: | retinal G protein coupled receptor |
| Gene Alias: | RP44 |
| Gene Description: | retinal G protein coupled receptor |
| Gene Type: | protein-coding |
| CpG%: | 0.015 |
| GC%: | 0.606965 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-35(GCCCTTTAAAAG,-,0.00),-34(CCCTTTAAAAGG,+,0.00),-34(CCCTTTAAAAGG,-,0.00),-33(CCTTTAAAAGGG,+,0.00)" |
