Difference between revisions of "TSS:Hg 105970.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.035 |distance_to_tss=33 |entrez_id=94233 |gc_percent=0.567164 |gene_alias=MOP |gene_description=opsin 4 |gene_name=OPN4 |gene_type=protein-coding |n...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |all_trans=ENST00000241891.9:18 ENST00000443292.1:18 uc001kdq.4:18 uc057uqf.1:18 BC029291:18 ENST00000372071.6:-25 NM_033282:-25 NM_001030015:-25 uc001kdp.4:-25 DQ426884:-33 BC113558:129 BC143688:129 KJ899974:184 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.035 | |cpg_percent=0.035 | ||
| + | |distance=18 | ||
|distance_to_tss=33 | |distance_to_tss=33 | ||
| + | |end=86654599 | ||
|entrez_id=94233 | |entrez_id=94233 | ||
|gc_percent=0.567164 | |gc_percent=0.567164 | ||
|gene_alias=MOP | |gene_alias=MOP | ||
|gene_description=opsin 4 | |gene_description=opsin 4 | ||
| − | |gene_name=OPN4 | + | |gene_id=94233 |
| + | |gene_name=opsin 4 | ||
| + | |gene_source=HGNC:14449 | ||
| + | |gene_symbol=OPN4 | ||
| + | |gene_synonyms=MOP melanopsin | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:14449 | ||
|nearest_ensembl=ENSG00000122375 | |nearest_ensembl=ENSG00000122375 | ||
|nearest_promoter_id=NM_033282 | |nearest_promoter_id=NM_033282 | ||
|nearest_refseq=NM_033282 | |nearest_refseq=NM_033282 | ||
|nearest_unigene=Hs.283922 | |nearest_unigene=Hs.283922 | ||
| + | |num_trans=13 | ||
| + | |species=human | ||
| + | |start=86654581 | ||
| + | |strand=+ | ||
|tata_box="-76(CGCTATATAAAG,-,0.00)" | |tata_box="-76(CGCTATATAAAG,-,0.00)" | ||
| + | |transcript_name=ENST00000241891.9 ENST00000443292.1 uc001kdq.4 uc057uqf.1 BC029291 | ||
| + | |tss_classification=no | ||
|tss_id=hg_105970.1 | |tss_id=hg_105970.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=C9JWU6 Q9UHM6 | ||
}} | }} | ||
Revision as of 21:58, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
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|
Transcript annotation
| Transcript_name: | ENST00000241891.9 ENST00000443292.1 uc001kdq.4 uc057uqf.1 BC029291 |
|---|---|
| Distance: | 18 |
| Num_trans: | 13 |
| All_trans: | ENST00000241891.9:18 ENST00000443292.1:18 uc001kdq.4:18 uc057uqf.1:18 BC029291:18 ENST00000372071.6:-25 NM_033282:-25 NM_001030015:-25 uc001kdp.4:-25 DQ426884:-33 BC113558:129 BC143688:129 KJ899974:184 |
TATA-Box annotation
| Distance to TSS: | 33 |
|---|---|
| Nearest PromoterID: | NM_033282 |
| Entrez ID: | 94233 |
| Nearest Unigene: | Hs.283922 |
| Nearest Refseq: | NM_033282 |
| Nearest Ensembl: | ENSG00000122375 |
| Gene Name: | opsin 4 |
| Gene Alias: | MOP |
| Gene Description: | opsin 4 |
| Gene Type: | protein-coding |
| CpG%: | 0.035 |
| GC%: | 0.567164 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-76(CGCTATATAAAG,-,0.00)" |
