Difference between revisions of "TSS:Hg 105971.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.03 |distance_to_tss=-1661 |entrez_id=11155 |gc_percent=0.651741 |gene_alias=CMD1C|CMH24|CMPD3|CYPHER|LDB3Z1|LDB3Z4|LVNC3|MFM4|ORACLE|PDLIM6|ZASP |ge...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |CMH24= | ||
| + | |CMPD3= | ||
| + | |CYPHER= | ||
| + | |LDB3Z1= | ||
| + | |LDB3Z4= | ||
| + | |LVNC3= | ||
| + | |MFM4= | ||
| + | |ORACLE= | ||
| + | |PDLIM6= | ||
| + | |ZASP= | ||
| + | |all_trans=AK294696:0 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.03 | |cpg_percent=0.03 | ||
| + | |distance=0 | ||
|distance_to_tss=-1661 | |distance_to_tss=-1661 | ||
| + | |end=86666799 | ||
|entrez_id=11155 | |entrez_id=11155 | ||
|gc_percent=0.651741 | |gc_percent=0.651741 | ||
|gene_alias=CMD1C|CMH24|CMPD3|CYPHER|LDB3Z1|LDB3Z4|LVNC3|MFM4|ORACLE|PDLIM6|ZASP | |gene_alias=CMD1C|CMH24|CMPD3|CYPHER|LDB3Z1|LDB3Z4|LVNC3|MFM4|ORACLE|PDLIM6|ZASP | ||
|gene_description=LIM domain binding 3 | |gene_description=LIM domain binding 3 | ||
| − | |gene_name=LDB3 | + | |gene_id=11155 |
| + | |gene_name=LIM domain binding 3 | ||
| + | |gene_source=HGNC:15710 | ||
| + | |gene_symbol=LDB3 | ||
| + | |gene_synonyms=KIAA0613 PDLIM6 ZASP | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:15710 | ||
|nearest_ensembl=ENSG00000122367 | |nearest_ensembl=ENSG00000122367 | ||
|nearest_promoter_id=NM_001171610 | |nearest_promoter_id=NM_001171610 | ||
|nearest_refseq=NM_007078 | |nearest_refseq=NM_007078 | ||
|nearest_unigene=Hs.657271 | |nearest_unigene=Hs.657271 | ||
| + | |num_trans=1 | ||
| + | |species=human | ||
| + | |start=86666776 | ||
| + | |strand=+ | ||
|tata_box="-35(GCCTTTAAGAGC,-,0.00),-34(CCTTTAAGAGCA,+,0.00)" | |tata_box="-35(GCCTTTAAGAGC,-,0.00),-34(CCTTTAAGAGCA,+,0.00)" | ||
| + | |transcript_name=AK294696 | ||
| + | |tss_classification=no | ||
|tss_id=hg_105971.1 | |tss_id=hg_105971.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=B4DGP4 | ||
}} | }} | ||
Revision as of 21:58, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | AK294696 |
|---|---|
| Distance: | 0 |
| Num_trans: | 1 |
| All_trans: | AK294696:0 |
TATA-Box annotation
| Distance to TSS: | -1661 |
|---|---|
| Nearest PromoterID: | NM_001171610 |
| Entrez ID: | 11155 |
| Nearest Unigene: | Hs.657271 |
| Nearest Refseq: | NM_007078 |
| Nearest Ensembl: | ENSG00000122367 |
| Gene Name: | LIM domain binding 3 |
| Gene Alias: | CMD1C |
| Gene Description: | LIM domain binding 3 |
| Gene Type: | protein-coding |
| CpG%: | 0.03 |
| GC%: | 0.651741 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "-35(GCCTTTAAGAGC,-,0.00),-34(CCTTTAAGAGCA,+,0.00)" |
