Difference between revisions of "TSS:Hg 105972.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.04 |distance_to_tss=-38 |entrez_id=11155 |gc_percent=0.631841 |gene_alias=CMD1C|CMH24|CMPD3|CYPHER|LDB3Z1|LDB3Z4|LVNC3|MFM4|ORACLE|PDLIM6|ZASP |gene...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |CMH24= | ||
| + | |CMPD3= | ||
| + | |CYPHER= | ||
| + | |LDB3Z1= | ||
| + | |LDB3Z4= | ||
| + | |LVNC3= | ||
| + | |MFM4= | ||
| + | |ORACLE= | ||
| + | |PDLIM6= | ||
| + | |ZASP= | ||
| + | |all_trans=ENST00000429277.6:35 NM_001171610:35 uc010qmm.3:35 ENST00000623056.3:93 uc057uqg.1:93 AK304760:93 AK300692:96 AK297871:97 NM_001080116:150 ENST00000372066.7:199 uc001kdr.4:199 AJ133766:199 BC010929:253 NM_007078:255 NM_001080115:255 NM_001171611:255 NM_001080114:255 ENST00000361373.8:257 uc001kdv.4:257 AB014513:257 BC111457:273 KJ898368:276 KR710344:276 KR710345:276 KR710346:276 KR710347:276 AB383921:277 ENST00000542786.1:278 ENST00000623007.3:278 ENST00000372056.8:278 ENST00000263066.10:278 uc057uqh.1:278 uc009xsy.4:278 uc001kds.4:278 uc001kdu.4:278 AF276807:278 AF276808:278 AF276809:278 KF772970:278 AJ133767:278 AJ133768:278 KU178543:278 KU178544:278 KU178545:278 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.04 | |cpg_percent=0.04 | ||
| + | |distance=35 | ||
|distance_to_tss=-38 | |distance_to_tss=-38 | ||
| + | |end=86668414 | ||
|entrez_id=11155 | |entrez_id=11155 | ||
|gc_percent=0.631841 | |gc_percent=0.631841 | ||
|gene_alias=CMD1C|CMH24|CMPD3|CYPHER|LDB3Z1|LDB3Z4|LVNC3|MFM4|ORACLE|PDLIM6|ZASP | |gene_alias=CMD1C|CMH24|CMPD3|CYPHER|LDB3Z1|LDB3Z4|LVNC3|MFM4|ORACLE|PDLIM6|ZASP | ||
|gene_description=LIM domain binding 3 | |gene_description=LIM domain binding 3 | ||
| − | |gene_name=LDB3 | + | |gene_id=11155 |
| + | |gene_name=LIM domain binding 3 | ||
| + | |gene_source=HGNC:15710 | ||
| + | |gene_symbol=LDB3 | ||
| + | |gene_synonyms=KIAA0613 PDLIM6 ZASP | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:15710 | ||
|nearest_ensembl=ENSG00000122367 | |nearest_ensembl=ENSG00000122367 | ||
|nearest_promoter_id=NM_001171610 | |nearest_promoter_id=NM_001171610 | ||
|nearest_refseq=NM_007078 | |nearest_refseq=NM_007078 | ||
|nearest_unigene=Hs.657271 | |nearest_unigene=Hs.657271 | ||
| + | |num_trans=44 | ||
| + | |species=human | ||
| + | |start=86668408 | ||
| + | |strand=+ | ||
|tata_box="41(GTCCATTTATGG,-,0.00),43(CCATTTATGGGC,+,0.00)" | |tata_box="41(GTCCATTTATGG,-,0.00),43(CCATTTATGGGC,+,0.00)" | ||
| + | |transcript_name=ENST00000429277.6 NM_001171610 uc010qmm.3 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_105972.1 | |tss_id=hg_105972.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=O75112 | ||
}} | }} | ||
Revision as of 21:58, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000429277.6 NM_001171610 uc010qmm.3 |
|---|---|
| Distance: | 35 |
| Num_trans: | 44 |
| All_trans: | ENST00000429277.6:35 NM_001171610:35 uc010qmm.3:35 ENST00000623056.3:93 uc057uqg.1:93 AK304760:93 AK300692:96 AK297871:97 NM_001080116:150 ENST00000372066.7:199 uc001kdr.4:199 AJ133766:199 BC010929:253 NM_007078:255 NM_001080115:255 NM_001171611:255 NM_001080114:255 ENST00000361373.8:257 uc001kdv.4:257 AB014513:257 BC111457:273 KJ898368:276 KR710344:276 KR710345:276 KR710346:276 KR710347:276 AB383921:277 ENST00000542786.1:278 ENST00000623007.3:278 ENST00000372056.8:278 ENST00000263066.10:278 uc057uqh.1:278 uc009xsy.4:278 uc001kds.4:278 uc001kdu.4:278 AF276807:278 AF276808:278 AF276809:278 KF772970:278 AJ133767:278 AJ133768:278 KU178543:278 KU178544:278 KU178545:278 |
TATA-Box annotation
| Distance to TSS: | -38 |
|---|---|
| Nearest PromoterID: | NM_001171610 |
| Entrez ID: | 11155 |
| Nearest Unigene: | Hs.657271 |
| Nearest Refseq: | NM_007078 |
| Nearest Ensembl: | ENSG00000122367 |
| Gene Name: | LIM domain binding 3 |
| Gene Alias: | CMD1C |
| Gene Description: | LIM domain binding 3 |
| Gene Type: | protein-coding |
| CpG%: | 0.04 |
| GC%: | 0.631841 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | "41(GTCCATTTATGG,-,0.00),43(CCATTTATGGGC,+,0.00)" |
