Difference between revisions of "TSS:Hg 105975.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.03 |distance_to_tss=-8 |entrez_id=11155 |gc_percent=0.656716 |gene_alias=CMD1C|CMH24|CMPD3|CYPHER|LDB3Z1|LDB3Z4|LVNC3|MFM4|ORACLE|PDLIM6|ZASP |gene_...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |CMH24= | ||
| + | |CMPD3= | ||
| + | |CYPHER= | ||
| + | |LDB3Z1= | ||
| + | |LDB3Z4= | ||
| + | |LVNC3= | ||
| + | |MFM4= | ||
| + | |ORACLE= | ||
| + | |PDLIM6= | ||
| + | |ZASP= | ||
| + | |all_trans=ENST00000361373.8:0 NM_007078:0 NM_001080115:0 NM_001171611:0 NM_001080114:0 uc001kdv.4:0 BC010929:0 AB014513:0 BC111457:9 KJ898368:12 KR710344:12 KR710345:12 KR710346:12 KR710347:12 AB383921:13 ENST00000542786.1:14 ENST00000623007.3:14 ENST00000372056.8:14 ENST00000263066.10:14 uc057uqh.1:14 uc009xsy.4:14 uc001kds.4:14 uc001kdu.4:14 AF276807:14 AF276808:14 AF276809:14 KF772970:14 AJ133767:14 AJ133768:14 KU178543:14 KU178544:14 KU178545:14 ENST00000372066.7:-31 uc001kdr.4:-31 AJ133766:-31 NM_001080116:-80 AK297871:-133 AK300692:-134 ENST00000623056.3:-137 uc057uqg.1:-137 AK304760:-137 ENST00000429277.6:-195 NM_001171610:-195 uc010qmm.3:-195 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.03 | |cpg_percent=0.03 | ||
| + | |distance=0 | ||
|distance_to_tss=-8 | |distance_to_tss=-8 | ||
| + | |end=86668678 | ||
|entrez_id=11155 | |entrez_id=11155 | ||
|gc_percent=0.656716 | |gc_percent=0.656716 | ||
|gene_alias=CMD1C|CMH24|CMPD3|CYPHER|LDB3Z1|LDB3Z4|LVNC3|MFM4|ORACLE|PDLIM6|ZASP | |gene_alias=CMD1C|CMH24|CMPD3|CYPHER|LDB3Z1|LDB3Z4|LVNC3|MFM4|ORACLE|PDLIM6|ZASP | ||
|gene_description=LIM domain binding 3 | |gene_description=LIM domain binding 3 | ||
| − | |gene_name=LDB3 | + | |gene_id=11155 |
| + | |gene_name=LIM domain binding 3 | ||
| + | |gene_source=HGNC:15710 | ||
| + | |gene_symbol=LDB3 | ||
| + | |gene_synonyms=KIAA0613 PDLIM6 ZASP | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:15710 | ||
|nearest_ensembl=ENSG00000122367 | |nearest_ensembl=ENSG00000122367 | ||
|nearest_promoter_id=NM_001171611 | |nearest_promoter_id=NM_001171611 | ||
|nearest_refseq=NM_007078 | |nearest_refseq=NM_007078 | ||
|nearest_unigene=Hs.657271 | |nearest_unigene=Hs.657271 | ||
| + | |num_trans=44 | ||
| + | |species=human | ||
| + | |start=86668643 | ||
| + | |strand=+ | ||
| + | |transcript_name=ENST00000361373.8 NM_007078 NM_001080115 NM_001171611 NM_001080114 uc001kdv.4 BC010929 AB014513 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_105975.1 | |tss_id=hg_105975.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=O75112 | ||
}} | }} | ||
Revision as of 21:58, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000361373.8 NM_007078 NM_001080115 NM_001171611 NM_001080114 uc001kdv.4 BC010929 AB014513 |
|---|---|
| Distance: | 0 |
| Num_trans: | 44 |
| All_trans: | ENST00000361373.8:0 NM_007078:0 NM_001080115:0 NM_001171611:0 NM_001080114:0 uc001kdv.4:0 BC010929:0 AB014513:0 BC111457:9 KJ898368:12 KR710344:12 KR710345:12 KR710346:12 KR710347:12 AB383921:13 ENST00000542786.1:14 ENST00000623007.3:14 ENST00000372056.8:14 ENST00000263066.10:14 uc057uqh.1:14 uc009xsy.4:14 uc001kds.4:14 uc001kdu.4:14 AF276807:14 AF276808:14 AF276809:14 KF772970:14 AJ133767:14 AJ133768:14 KU178543:14 KU178544:14 KU178545:14 ENST00000372066.7:-31 uc001kdr.4:-31 AJ133766:-31 NM_001080116:-80 AK297871:-133 AK300692:-134 ENST00000623056.3:-137 uc057uqg.1:-137 AK304760:-137 ENST00000429277.6:-195 NM_001171610:-195 uc010qmm.3:-195 |
TATA-Box annotation
| Distance to TSS: | -8 |
|---|---|
| Nearest PromoterID: | NM_001171611 |
| Entrez ID: | 11155 |
| Nearest Unigene: | Hs.657271 |
| Nearest Refseq: | NM_007078 |
| Nearest Ensembl: | ENSG00000122367 |
| Gene Name: | LIM domain binding 3 |
| Gene Alias: | CMD1C |
| Gene Description: | LIM domain binding 3 |
| Gene Type: | protein-coding |
| CpG%: | 0.03 |
| GC%: | 0.656716 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
