Difference between revisions of "TSS:Hg 105976.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.03 |distance_to_tss=57 |entrez_id=11155 |gc_percent=0.646766 |gene_alias=CMD1C|CMH24|CMPD3|CYPHER|LDB3Z1|LDB3Z4|LVNC3|MFM4|ORACLE|PDLIM6|ZASP |gene_...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |CMH24= | ||
| + | |CMPD3= | ||
| + | |CYPHER= | ||
| + | |LDB3Z1= | ||
| + | |LDB3Z4= | ||
| + | |LVNC3= | ||
| + | |MFM4= | ||
| + | |ORACLE= | ||
| + | |PDLIM6= | ||
| + | |ZASP= | ||
| + | |all_trans=ENST00000542786.1:-28 ENST00000623007.3:-28 ENST00000372056.8:-28 ENST00000263066.10:-28 uc057uqh.1:-28 uc009xsy.4:-28 uc001kds.4:-28 uc001kdu.4:-28 AF276807:-28 AF276808:-28 AF276809:-28 KF772970:-28 AJ133767:-28 AJ133768:-28 KU178543:-28 KU178544:-28 KU178545:-28 AB383921:-29 KJ898368:-30 KR710344:-30 KR710345:-30 KR710346:-30 KR710347:-30 BC111457:-33 ENST00000361373.8:-49 uc001kdv.4:-49 AB014513:-49 NM_007078:-51 NM_001080115:-51 NM_001171611:-51 NM_001080114:-51 BC010929:-53 ENST00000372066.7:-107 uc001kdr.4:-107 AJ133766:-107 NM_001080116:-156 AK297871:-209 AK300692:-210 ENST00000623056.3:-213 uc057uqg.1:-213 AK304760:-213 ENST00000429277.6:-271 NM_001171610:-271 uc010qmm.3:-271 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.03 | |cpg_percent=0.03 | ||
| + | |distance=-28 | ||
|distance_to_tss=57 | |distance_to_tss=57 | ||
| + | |end=86668733 | ||
|entrez_id=11155 | |entrez_id=11155 | ||
|gc_percent=0.646766 | |gc_percent=0.646766 | ||
|gene_alias=CMD1C|CMH24|CMPD3|CYPHER|LDB3Z1|LDB3Z4|LVNC3|MFM4|ORACLE|PDLIM6|ZASP | |gene_alias=CMD1C|CMH24|CMPD3|CYPHER|LDB3Z1|LDB3Z4|LVNC3|MFM4|ORACLE|PDLIM6|ZASP | ||
|gene_description=LIM domain binding 3 | |gene_description=LIM domain binding 3 | ||
| − | |gene_name=LDB3 | + | |gene_id=11155 |
| + | |gene_name=LIM domain binding 3 | ||
| + | |gene_source=HGNC:15710 | ||
| + | |gene_symbol=LDB3 | ||
| + | |gene_synonyms=KIAA0613 PDLIM6 ZASP | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:15710 | ||
|nearest_ensembl=ENSG00000122367 | |nearest_ensembl=ENSG00000122367 | ||
|nearest_promoter_id=NM_007078 | |nearest_promoter_id=NM_007078 | ||
|nearest_refseq=NM_007078 | |nearest_refseq=NM_007078 | ||
|nearest_unigene=Hs.657271 | |nearest_unigene=Hs.657271 | ||
| + | |num_trans=44 | ||
| + | |species=human | ||
| + | |start=86668719 | ||
| + | |strand=+ | ||
| + | |transcript_name=ENST00000542786.1 ENST00000623007.3 ENST00000372056.8 ENST00000263066.10 uc057uqh.1 uc009xsy.4 uc001kds.4 uc001kdu.4 AF276807 AF276808 AF276809 KF772970 AJ133767 AJ133768 KU178543 KU178544 KU178545 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_105976.1 | |tss_id=hg_105976.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=A0A0C4DGG7 A0A0S2Z501 A0A0S2Z521 O75112 V5T7C5 | ||
}} | }} | ||
Revision as of 21:58, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000542786.1 ENST00000623007.3 ENST00000372056.8 ENST00000263066.10 uc057uqh.1 uc009xsy.4 uc001kds.4 uc001kdu.4 AF276807 AF276808 AF276809 KF772970 AJ133767 AJ133768 KU178543 KU178544 KU178545 |
|---|---|
| Distance: | -28 |
| Num_trans: | 44 |
| All_trans: | ENST00000542786.1:-28 ENST00000623007.3:-28 ENST00000372056.8:-28 ENST00000263066.10:-28 uc057uqh.1:-28 uc009xsy.4:-28 uc001kds.4:-28 uc001kdu.4:-28 AF276807:-28 AF276808:-28 AF276809:-28 KF772970:-28 AJ133767:-28 AJ133768:-28 KU178543:-28 KU178544:-28 KU178545:-28 AB383921:-29 KJ898368:-30 KR710344:-30 KR710345:-30 KR710346:-30 KR710347:-30 BC111457:-33 ENST00000361373.8:-49 uc001kdv.4:-49 AB014513:-49 NM_007078:-51 NM_001080115:-51 NM_001171611:-51 NM_001080114:-51 BC010929:-53 ENST00000372066.7:-107 uc001kdr.4:-107 AJ133766:-107 NM_001080116:-156 AK297871:-209 AK300692:-210 ENST00000623056.3:-213 uc057uqg.1:-213 AK304760:-213 ENST00000429277.6:-271 NM_001171610:-271 uc010qmm.3:-271 |
TATA-Box annotation
| Distance to TSS: | 57 |
|---|---|
| Nearest PromoterID: | NM_007078 |
| Entrez ID: | 11155 |
| Nearest Unigene: | Hs.657271 |
| Nearest Refseq: | NM_007078 |
| Nearest Ensembl: | ENSG00000122367 |
| Gene Name: | LIM domain binding 3 |
| Gene Alias: | CMD1C |
| Gene Description: | LIM domain binding 3 |
| Gene Type: | protein-coding |
| CpG%: | 0.03 |
| GC%: | 0.646766 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
