Difference between revisions of "TSS:Hg 105977.1"
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.035 |distance_to_tss=82 |entrez_id=11155 |gc_percent=0.646766 |gene_alias=CMD1C|CMH24|CMPD3|CYPHER|LDB3Z1|LDB3Z4|LVNC3|MFM4|ORACLE|PDLIM6|ZASP |gene...") |
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{{TSSDetail | {{TSSDetail | ||
| + | |CMH24= | ||
| + | |CMPD3= | ||
| + | |CYPHER= | ||
| + | |LDB3Z1= | ||
| + | |LDB3Z4= | ||
| + | |LVNC3= | ||
| + | |MFM4= | ||
| + | |ORACLE= | ||
| + | |PDLIM6= | ||
| + | |ZASP= | ||
| + | |all_trans=ENST00000542786.1:-54 ENST00000623007.3:-54 ENST00000372056.8:-54 ENST00000263066.10:-54 uc057uqh.1:-54 uc009xsy.4:-54 uc001kds.4:-54 uc001kdu.4:-54 AF276807:-54 AF276808:-54 AF276809:-54 KF772970:-54 AJ133767:-54 AJ133768:-54 KU178543:-54 KU178544:-54 KU178545:-54 AB383921:-55 KJ898368:-56 KR710344:-56 KR710345:-56 KR710346:-56 KR710347:-56 BC111457:-59 ENST00000361373.8:-75 uc001kdv.4:-75 AB014513:-75 NM_007078:-77 NM_001080115:-77 NM_001171611:-77 NM_001080114:-77 BC010929:-79 ENST00000372066.7:-133 uc001kdr.4:-133 AJ133766:-133 NM_001080116:-182 AK297871:-235 AK300692:-236 ENST00000623056.3:-239 uc057uqg.1:-239 AK304760:-239 ENST00000429277.6:-297 NM_001171610:-297 uc010qmm.3:-297 | ||
| + | |chr=chr10 | ||
|cpg_percent=0.035 | |cpg_percent=0.035 | ||
| + | |distance=-54 | ||
|distance_to_tss=82 | |distance_to_tss=82 | ||
| + | |end=86668756 | ||
|entrez_id=11155 | |entrez_id=11155 | ||
|gc_percent=0.646766 | |gc_percent=0.646766 | ||
|gene_alias=CMD1C|CMH24|CMPD3|CYPHER|LDB3Z1|LDB3Z4|LVNC3|MFM4|ORACLE|PDLIM6|ZASP | |gene_alias=CMD1C|CMH24|CMPD3|CYPHER|LDB3Z1|LDB3Z4|LVNC3|MFM4|ORACLE|PDLIM6|ZASP | ||
|gene_description=LIM domain binding 3 | |gene_description=LIM domain binding 3 | ||
| − | |gene_name=LDB3 | + | |gene_id=11155 |
| + | |gene_name=LIM domain binding 3 | ||
| + | |gene_source=HGNC:15710 | ||
| + | |gene_symbol=LDB3 | ||
| + | |gene_synonyms=KIAA0613 PDLIM6 ZASP | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
| + | |hgnc_mgi_id=HGNC:15710 | ||
|nearest_ensembl=ENSG00000122367 | |nearest_ensembl=ENSG00000122367 | ||
|nearest_promoter_id=NM_007078 | |nearest_promoter_id=NM_007078 | ||
|nearest_refseq=NM_007078 | |nearest_refseq=NM_007078 | ||
|nearest_unigene=Hs.657271 | |nearest_unigene=Hs.657271 | ||
| + | |num_trans=44 | ||
| + | |species=human | ||
| + | |start=86668745 | ||
| + | |strand=+ | ||
| + | |transcript_name=ENST00000542786.1 ENST00000623007.3 ENST00000372056.8 ENST00000263066.10 uc057uqh.1 uc009xsy.4 uc001kds.4 uc001kdu.4 AF276807 AF276808 AF276809 KF772970 AJ133767 AJ133768 KU178543 KU178544 KU178545 | ||
| + | |tss_classification=yes | ||
|tss_id=hg_105977.1 | |tss_id=hg_105977.1 | ||
| + | |tss_score=1 | ||
| + | |uniprot_id=A0A0C4DGG7 A0A0S2Z501 A0A0S2Z521 O75112 V5T7C5 | ||
}} | }} | ||
Revision as of 21:58, 8 March 2018
Basic information about the TSS
|
|
| Start of the center position in the TSS region: | |
|---|---|
| End of the center position in the TSS region: |
Gene and protein annotation
|
|
Transcript annotation
| Transcript_name: | ENST00000542786.1 ENST00000623007.3 ENST00000372056.8 ENST00000263066.10 uc057uqh.1 uc009xsy.4 uc001kds.4 uc001kdu.4 AF276807 AF276808 AF276809 KF772970 AJ133767 AJ133768 KU178543 KU178544 KU178545 |
|---|---|
| Distance: | -54 |
| Num_trans: | 44 |
| All_trans: | ENST00000542786.1:-54 ENST00000623007.3:-54 ENST00000372056.8:-54 ENST00000263066.10:-54 uc057uqh.1:-54 uc009xsy.4:-54 uc001kds.4:-54 uc001kdu.4:-54 AF276807:-54 AF276808:-54 AF276809:-54 KF772970:-54 AJ133767:-54 AJ133768:-54 KU178543:-54 KU178544:-54 KU178545:-54 AB383921:-55 KJ898368:-56 KR710344:-56 KR710345:-56 KR710346:-56 KR710347:-56 BC111457:-59 ENST00000361373.8:-75 uc001kdv.4:-75 AB014513:-75 NM_007078:-77 NM_001080115:-77 NM_001171611:-77 NM_001080114:-77 BC010929:-79 ENST00000372066.7:-133 uc001kdr.4:-133 AJ133766:-133 NM_001080116:-182 AK297871:-235 AK300692:-236 ENST00000623056.3:-239 uc057uqg.1:-239 AK304760:-239 ENST00000429277.6:-297 NM_001171610:-297 uc010qmm.3:-297 |
TATA-Box annotation
| Distance to TSS: | 82 |
|---|---|
| Nearest PromoterID: | NM_007078 |
| Entrez ID: | 11155 |
| Nearest Unigene: | Hs.657271 |
| Nearest Refseq: | NM_007078 |
| Nearest Ensembl: | ENSG00000122367 |
| Gene Name: | LIM domain binding 3 |
| Gene Alias: | CMD1C |
| Gene Description: | LIM domain binding 3 |
| Gene Type: | protein-coding |
| CpG%: | 0.035 |
| GC%: | 0.646766 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
